Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04230 ATGTATTCAACGCAACGCCCCATTTTCTTACCCTTTACACACAACTTTCCAAAACACTTCACAAGTTTTTCAAGAAAGATGGCAAATTGGTGGGCAAATGGAAGTCAGAACGAGGTGAACCCGATGGAAGGTTCGAATCAGAACGCTGGTTCGAACTTTATCGGGTTACGGAGAGACCAAGACTTTGAAAACAACATCGGCAACGTTACTCCAACTCCAACGTTGAGTAACAACAGCAACACCAACACCGTTAACATTAACGGTAACGTGAACGGAGAAGCTGAGAACAGCAGTGGCCGTGTGAGCAGCGGACAGAACACCGGAAGTGGCGGACGCCGTCCACGTGGACGTCCGCCCGGCTCAAAAAATAAGCCAAAACCGCCTGTGGTGATAACAAGAGAAACACCAAACGCGCTGCGCAGCTTCCTCTTGGAAGTTGCCGACGGAAACGACATCTCATTTTGTGTTTCCAGTTTCGCGAATGTTCGCCACCGTGGAGTTTCGATTCTCAGCGGTTCCGGCGCTGTTAGCAATGTCACTCTCCGGAACCCGTCTGCTCCAACTGGAATGATTGTTCTTCATGGGAGGTATGAACTTGTTTCACTCAGTGGTGCTTTTTTGCCTCCGCCGTCGCCTCCGTCGGCTACTGGACTGGTTGCTTATCTCGCCGGAGGTCATGGGCAGATAATCGGAGGATCGGTTGTCGGGAATTTGGTTGCTTGTGGACCTGTCATGATCATTGCTGCCACTTTTGCTAATGCTACTTATGAAAGATTACCATTAGCTTTAGAAGAGGCACAGGAAGAAAATGTGCAAGAAATTAATAACACTAATCATGTTATTAATAACACTAATCATGTTATTAATAATACCATTGGTGTTATTAACAATGATGGTGGTTCTGGTTCTGGTTCCGGTGCTTCTGGCTCAGCTAGTGGTAGCGGCGGCGGTGGTGGCGCAACTTCTCATATTGGATTAGCTGATTACAATTTGAATCCAAGTTTGCTGCAGAATGGTGGTGGTGGACACACCGTGACACATGATGTGTTCTGGCGTCCACCAGGGTTCTGA 1071 0.4781 MYSTQRPIFLPFTHNFPKHFTSFSRKMANWWANGSQNEVNPMEGSNQNAGSNFIGLRRDQDFENNIGNVTPTPTLSNNSNTNTVNINGNVNGEAENSSGRVSSGQNTGSGGRRPRGRPPGSKNKPKPPVVITRETPNALRSFLLEVADGNDISFCVSSFANVRHRGVSILSGSGAVSNVTLRNPSAPTGMIVLHGRYELVSLSGAFLPPPSPPSATGLVAYLAGGHGQIIGGSVVGNLVACGPVMIIAATFANATYERLPLALEEAQEENVQEINNTNHVINNTNHVINNTIGVINNDGGSGSGSGASGSASGSGGGGGATSHIGLADYNLNPSLLQNGGGGHTVTHDVFWRPPGF 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04230 356 MobiDBLite consensus disorder prediction 63 110 - -
Trre9g04230 356 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 252 IPR005175 -
Trre9g04230 356 Gene3D - 139 279 - -
Trre9g04230 356 CDD DUF296 140 251 IPR005175 -
Trre9g04230 356 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 81 352 IPR014476 GO:0003680
Trre9g04230 356 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 262 - -
Trre9g04230 356 MobiDBLite consensus disorder prediction 63 133 - -
Trre9g04230 356 ProSiteProfiles PPC domain profile profile. 136 275 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04230 Trre-Chr9 50072530 50075301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04230 112 265 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 62.987 5.68e-57 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04230 - - cam:101507777 306.605