Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04227 ATGACAGGGTTTGGCTCATCATGTGGAGCATGCAAATTCTTAAGGAGAAAGTGTGCTAGTGATTGTGTATTTGCTCCTTACTTCTCTTATGACCAAGCTTCAACCCATTTTGCAGCTGTTCATAAGGTTTATGGTGCTAGTAATGTGTCAAGACTATTGTCACATCTTCCTATTCAAAATAGAAGTGATGCTGCCATCACTATATCTTATGAAGCCTTGGCTCGCATGCAAGATCCTAAATATGGTTGTGTTGCTCATATCTATGCATTGCAACATCAGGTTGCAAGCTTGCAAGAGGAGATAGATATTCTTGGAAGTGTAATGGCAAATAATTCAAGTGTTAGTGTTGTGAATTGTGGACATGTTCAAACACCAATAATCGACCCAAACATTGGAACACAATATTACCATAATCAAAGTTTTGATTCATACATGGATATGGAGCTAATTCCAAATTCACATGGATTGGAAGAGCCTTTGTATGGTGATTTCAACTCCAATCCATTAGAGAAATTCCTATCCGGAATTGATCAAGAGGGGTTCCTGAACCACCCTTGGTTCAAGCATAATGCAAACATGAAGAACTAG 588 0.3861 MTGFGSSCGACKFLRRKCASDCVFAPYFSYDQASTHFAAVHKVYGASNVSRLLSHLPIQNRSDAAITISYEALARMQDPKYGCVAHIYALQHQVASLQEEIDILGSVMANNSSVSVVNCGHVQTPIIDPNIGTQYYHNQSFDSYMDMELIPNSHGLEEPLYGDFNSNPLEKFLSGIDQEGFLNHPWFKHNANMKN 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04227 195 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Trre9g04227 195 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 119 - -
Trre9g04227 195 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04227 Trre-Chr9 50046533 50047564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04227 1 110 AS2 family AT5G06080 73.636 7.62e-56 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre9g04227 LOB 1.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04227 K13945 - gmx:100809636 306.219