Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04222 ATGTCTTCGCATTGGTGTTACAGGTGCAACAAATTTGTTAGGGTATGGAGGCTAGGGATGCCAATATGTTTAGATTGTGATAGTGGTTTTGTTGAAGAGCTCGAACATTCCACACGTTCTCTCCATGTGGACGGTGGTCCTCAAAGGAGGTTCCCTATGTCGGCGGCCATGTACATGATGGGCCACAACAATAATAATTCCAATCAAAATACTCGTAGACGCCGTTGCAGAAATAATATTAACGCAGATTATAACATTTCTGACCCAATCATCATGATCCGCGGTAGCGGATCATCTGGGAGTACGGGCCGTGAGGGCGAAGGGAATCGTGGATTTGAACTTTTCTACGAAGATGGTGCCGGTTCTGGTCTACGACCATTGCCTCCAAGGATGTCAGATTTTCTTCTTGGATCTGGATTTGAAAGGGTGATGGAAAACCTTTCTCATGTCGAATCTAATCGAAATAGAAACGAGCGACATAATCAACAACAATTACCGGCATCAAAATCCGCCGTAGAATTGTTACCAATGATTGAAATTAATGAAACTCACATGGAGATAGAATCACATTGTGCCGTTTGCAAAGAGATGTTTGAGCTTGGCATTGTGGCAAGAGAAATGCCATGCAAACACATATACCACGATGAATGCATACTTCCATGGCTTGCAATTAAAAATTCTTGTCCGGTATGTCGCCATGAACTTCCTTGTGAAGAATCACCACAAAATAACAATTTTCAAAATTTAGAAGACAATGTTGGGTTGACGATTTATCGGTTACCGGGTGGAGGGTTTGCCGTGGGAAGATTCTCCGGTGGAAGAAACGGCGTTGCGGGCGGGGATGAAAATGAAAGAGAGCTTCCTATTGTTTACACGGAGATGGATGGTGCATTTAACAATATTGGTGAACCTAGGAGAATTTCATGGTCATTAACATCATCTAGAGGAAGGAGAGGAAGAAGAAGTAGTGGGGGTGGATTTCGTAGAATGGTGAACAATTTGTTTGGATGTTTGGGAGGTGGGGGTGCAATTAGCAATAATCAACGTTCTCTTCCTACTACTAGAGAGTTTTCTCAATCTATGACTACCATGAGAAATAATAGTGCATCTAATACCAATGAGAGTTCTTCTACACGTTCACGTAGAACTTGGTCTATGGATGTAAATGGTGGAATTAGACCGTGGTAA 1188 0.4251 MSSHWCYRCNKFVRVWRLGMPICLDCDSGFVEELEHSTRSLHVDGGPQRRFPMSAAMYMMGHNNNNSNQNTRRRRCRNNINADYNISDPIIMIRGSGSSGSTGREGEGNRGFELFYEDGAGSGLRPLPPRMSDFLLGSGFERVMENLSHVESNRNRNERHNQQQLPASKSAVELLPMIEINETHMEIESHCAVCKEMFELGIVAREMPCKHIYHDECILPWLAIKNSCPVCRHELPCEESPQNNNFQNLEDNVGLTIYRLPGGGFAVGRFSGGRNGVAGGDENERELPIVYTEMDGAFNNIGEPRRISWSLTSSRGRRGRRSSGGGFRRMVNNLFGCLGGGGAISNNQRSLPTTREFSQSMTTMRNNSASNTNESSSTRSRRTWSMDVNGGIRPW 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04222 395 MobiDBLite consensus disorder prediction 362 395 - -
Trre9g04222 395 Pfam Protein of unknown function (DUF1117) 253 369 IPR010543 -
Trre9g04222 395 SUPERFAMILY RING/U-box 176 244 - -
Trre9g04222 395 FunFam E3 ubiquitin-protein ligase RING1-like 153 238 - -
Trre9g04222 395 MobiDBLite consensus disorder prediction 362 385 - -
Trre9g04222 395 Pfam Ring finger domain 190 232 IPR001841 -
Trre9g04222 395 Pfam zinc-ribbon 3 34 IPR039525 GO:0061630
Trre9g04222 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 238 IPR013083 -
Trre9g04222 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 129 236 - -
Trre9g04222 395 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Trre9g04222 395 SMART ring_2 191 231 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04222 Trre-Chr9 49996653 49997840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04222 126 239 C3H Transcription Factor Family AT5G01980 38.596 1.47e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04222 K11982 - gmx:100789228 402.134