Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04210 ATGGGAAAGAAAAACAAAGCGATGAGAGAAAATAGCGACGGCACTATTAAACAATGCCCCTTAACTCTTTTCGTTGCAAATTTACCCTACTCTTTTACAAATTCTCAGCTTGCAGAAACATTCAGTGAAGTTGGACCTGTTAGACGTTGTTTCATGGTTACACCAAAGGGGTCTGACCAACATCGTGGTTTCGGTTATGTTACATTTGCTGTTGAGAAAGACGCTGACACCGCCGTTGAGCTGAAGAATGGTTCATTGGTTGGTGGCCGAAAGATTTCAGTGAAGCACGCAATGCCTCGTCCACCCCGTGAAAAGAAATCAAAACCAGATCAAGAGGGCAATAAAGATGATCTCACAGAGTCAAAAAATGATGATAAAGACAACGGATTATCTGGAGTAGTGAAGCCTGTTTCAGTTCCAAAGGAAGAATCAGTTCCAAAGGAGGAAGAAGAGAAAGTTTTGAATAATGCGAAAAACTCAAGGAAGCCTGTGGAAATAAAAAAAGCAGCTCTTTGTAATGATGCAGCAGATCAGGGGGGTGGCTCAGAAAAGCAGAAGGTTGCTAGGACTGTTATATTTGGTGGTCTCATAAATTCTGCTATGGCTGAAGATGTTCACCGCCAAGCCAGAGATATTGGTACTGTGTGTTCTATCAAGTATCCCCTTTCAAGAAATGATCTTCAGCAACATGGTCTGCTGCAAGATGGCTGTACTTCAGATGCTTCAGCTGTACTATATACAAGTGTAAAATCAGCTCGTGCTTCCGTTGCAAAATTGCATAAAAAAGAGATAGGAGGGGGAACTGTTTGGGCACGACAACTTGGCGGTGAGGGCGCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCCAAAGAAAATGAAATAAGTGATGCATTTTCATCTGCGGGGCCTGTTTGGGAGGTATTCATTCCACAGAAGTCTGACACAGGTCTTTCAAAGGGTTTTGCATTTGTAAAATTCACCTGCAAGCAAGATGCTGAAAATGCCATTAAAAAACTCAATGGATCAAAGTTTGGGAGTCGTCTCATAGCTGTTGACTGGGCTGTTCCAAAAAAGATATTTAGTAGTGATACCAATGATGCTCCTGCTTCAGAGGAAGGACAACAAAAGGTGACAGATGAAGATGATAGTACTACTACTGAGGATGATGTTGAGCATAGTGACAAACAATCTGATCATGAAGATGATAGTGATGTTGATAGTGTCGTGGAGGAAGATGTTCCTTCTGGAGATGATTTTGACAAGGAAGCAGACATTGCAAGAAAGGTTCTTAACAACTTGATTACGTCCTCCTCTGCCAAAGATGTGTCTGCAGATAACGATTCTACACGTTCTGAAGAAAATAAGGAGCCAAAATCCAACGAAATTGTTAAGGGCGCAGATAGTAAAGCATCTAAAGAGTCTGACAAGGTTTCTGCTATTTCTAAGCCCGAGACTTCCAGCAGGTTATCTAAACCTAAGGAATCAGAAGATGATTTGCAAAGAACAGTTTTTATAAGCAATATTCCCTTTGAATGTGATATCGAAGAAGTGAAGCAAAGGTTTTCTGCATTTGGAGTAGTAGAGTATTTTGCTCCTGTTCTCCACCAATTGACCAAGCGTCCACGAGGGACTGGTTTTCTTAAGTTTAAAACTGTGGAAGCAGCTGATAATGCGATTTCAGCTGCCAATGCTGCTTCTGGGATGGGTATTTTAGTGAAGGGTAGACCATTAAAAGTTTTAAAAGCTCTGGACAGGAAATCAGCTCATGAAAAGGAACTGGAGAAAGAAAAAAATGAGGTTCATGACCACCGCAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGCCGGGACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATAGCAAAGCGCAAAGATTTGGAAAGGAAAAAGAAGACGAAGCTTCAATCTCCAAATTTCCATGTTTCAAAAACTAGACTTGTTATCTACAACTTACCGAAGTCCATGACTGAAAAACAACTAAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGACAGATAAAGATTTTGAAAGATGGAAGGAAAGGAAAGGCTACTCAAGAACAACAGTATTCCCGTGGAGTCGCCTTTCTTGAATTTTCAGAGCATCAGCATGCCCTTGTTGCTTTGAGAGTTCTTAACAATAATCCTGAAACTTTTGGTCCTGAACACCGGCCAATTGTGGAGTTTGCTCTTGATAATGTTCAAACATTGAAACTACGTAATGCAAAGCTACAATATCAGCAGCAGGCTCCTCGTGATGACAACAGAAATGAAAATGATAAACCCGACAATGAAGGAGGTTACACACATGGAACCGACAGGAAACGAAAATCTCAAGAGCACAACATACCAGCAAAAGACTCAGGATTGACTTCAAATAGTGAACAAAGCGGTAAAGTGGCAAATGGAAAACCTCCTCATGGAGACAAAACCAAAAGACAGAAAGGCAACCATAAGAGTACCAATACTGACATGTTATCATCGAAAGAAAGTCTGAAAGCTTCGGCGAGGAAGTCAAAGAATAATGATGATGGCCAGAATCACGGTGGTAAATTACATGAAGGTAAAAATACTGCCATTGACAGTAATAATATGAAAATATCAGGAAAGAAAGATGACGTGGTATATGGAAAGAGGAAGATGCAAAACCGAGAACAAGCAGGGGAAAAGGTTTCTAGGAAAAGGGCAAAGAAGAATAAAGATTCAATAGGGAAGGACACAGTAGATAAGCTTGATATGCTTATAGAACAATATAAATCCAAGTTCTCACAAAAGGGTTCCCAAGGAAATGATGGTGAGAAAAAACAACCTCAACAACAGCTTAGAAAATGGTACCAATCATAA 2916 0.4067 MGKKNKAMRENSDGTIKQCPLTLFVANLPYSFTNSQLAETFSEVGPVRRCFMVTPKGSDQHRGFGYVTFAVEKDADTAVELKNGSLVGGRKISVKHAMPRPPREKKSKPDQEGNKDDLTESKNDDKDNGLSGVVKPVSVPKEESVPKEEEEKVLNNAKNSRKPVEIKKAALCNDAADQGGGSEKQKVARTVIFGGLINSAMAEDVHRQARDIGTVCSIKYPLSRNDLQQHGLLQDGCTSDASAVLYTSVKSARASVAKLHKKEIGGGTVWARQLGGEGAKTQKWKLIVRNLPFKAKENEISDAFSSAGPVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIKKLNGSKFGSRLIAVDWAVPKKIFSSDTNDAPASEEGQQKVTDEDDSTTTEDDVEHSDKQSDHEDDSDVDSVVEEDVPSGDDFDKEADIARKVLNNLITSSSAKDVSADNDSTRSEENKEPKSNEIVKGADSKASKESDKVSAISKPETSSRLSKPKESEDDLQRTVFISNIPFECDIEEVKQRFSAFGVVEYFAPVLHQLTKRPRGTGFLKFKTVEAADNAISAANAASGMGILVKGRPLKVLKALDRKSAHEKELEKEKNEVHDHRNLYLAKEGLILAGTPAAEGVSASDIAKRKDLERKKKTKLQSPNFHVSKTRLVIYNLPKSMTEKQLKKLCIDAVISRATKQKPVIRQIKILKDGRKGKATQEQQYSRGVAFLEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRNAKLQYQQQAPRDDNRNENDKPDNEGGYTHGTDRKRKSQEHNIPAKDSGLTSNSEQSGKVANGKPPHGDKTKRQKGNHKSTNTDMLSSKESLKASARKSKNNDDGQNHGGKLHEGKNTAIDSNNMKISGKKDDVVYGKRKMQNREQAGEKVSRKRAKKNKDSIGKDTVDKLDMLIEQYKSKFSQKGSQGNDGEKKQPQQQLRKWYQS 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04210 971 SUPERFAMILY RNA-binding domain, RBD 280 365 IPR035979 GO:0003676
Trre9g04210 971 PANTHER RNA-BINDING MOTIF PROTEIN 14B 19 971 - -
Trre9g04210 971 MobiDBLite consensus disorder prediction 829 843 - -
Trre9g04210 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Trre9g04210 971 MobiDBLite consensus disorder prediction 855 879 - -
Trre9g04210 971 Gene3D - 437 605 IPR012677 -
Trre9g04210 971 Gene3D - 2 112 IPR012677 -
Trre9g04210 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 507 590 IPR000504 GO:0003723
Trre9g04210 971 MobiDBLite consensus disorder prediction 445 504 - -
Trre9g04210 971 MobiDBLite consensus disorder prediction 770 971 - -
Trre9g04210 971 MobiDBLite consensus disorder prediction 97 129 - -
Trre9g04210 971 MobiDBLite consensus disorder prediction 777 807 - -
Trre9g04210 971 CDD RRM4_RBM28_like 659 757 - -
Trre9g04210 971 Gene3D - 272 395 IPR012677 -
Trre9g04210 971 MobiDBLite consensus disorder prediction 90 159 - -
Trre9g04210 971 MobiDBLite consensus disorder prediction 808 824 - -
Trre9g04210 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 362 IPR000504 GO:0003723
Trre9g04210 971 MobiDBLite consensus disorder prediction 451 485 - -
Trre9g04210 971 MobiDBLite consensus disorder prediction 944 971 - -
Trre9g04210 971 MobiDBLite consensus disorder prediction 367 428 - -
Trre9g04210 971 SUPERFAMILY RNA-binding domain, RBD 22 270 IPR035979 GO:0003676
Trre9g04210 971 MobiDBLite consensus disorder prediction 409 424 - -
Trre9g04210 971 MobiDBLite consensus disorder prediction 141 159 - -
Trre9g04210 971 CDD RRM1_RBM28_like 22 100 - -
Trre9g04210 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 659 773 IPR000504 GO:0003723
Trre9g04210 971 SUPERFAMILY RNA-binding domain, RBD 507 738 IPR035979 GO:0003676
Trre9g04210 971 Coils Coil 585 612 - -
Trre9g04210 971 Gene3D - 658 754 IPR012677 -
Trre9g04210 971 CDD RRM2_RBM28_like 285 361 - -
Trre9g04210 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 92 IPR000504 GO:0003723
Trre9g04210 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 355 IPR000504 GO:0003723
Trre9g04210 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 509 570 IPR000504 GO:0003723
Trre9g04210 971 MobiDBLite consensus disorder prediction 890 940 - -
Trre9g04210 971 FunFam RNA-binding motif protein 28 658 754 - -
Trre9g04210 971 SMART rrm1_1 285 358 IPR000504 GO:0003723
Trre9g04210 971 SMART rrm1_1 660 752 IPR000504 GO:0003723
Trre9g04210 971 SMART rrm1_1 22 95 IPR000504 GO:0003723
Trre9g04210 971 SMART rrm1_1 508 586 IPR000504 GO:0003723
Trre9g04210 971 MobiDBLite consensus disorder prediction 394 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04210 Trre-Chr9 49843293 49850856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04210 288 363 Eukaryotic Initiation Factors Gene Family AT3G11400 36.842 5.41e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04210 K14573 - gmx:100794821 1274.61