Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04209 ATGGGAAAGAAAAACAAAGCGATGAGAGAAAATAGCGACGGCACTATTAAACAATGCCCCTTAACTCTTTTCGTTGCAAATTTACCCTACTCTTTTACAAATTCTCAGCTTGCAGAAACATTCAGTGAAGTTGGACCTGTTAGACGTTGTTTCATGGTTACACCAAAGGGGTCTGACCAACATCGTGGTTTCGGTTATGTTACATTTGCTGTTGAGAAAGACGCTGACACCGCCGTTGAGCTGAAGAATGGTTCATTGGTTGGTGGCCGAAAGATTTCAGTGAAGCACGCAATGCCTCGTCCACCCCGTGAAAAGAAATCAAAACCAGATCAAGAGGGCAATAAAGATGATCTCACAGAGTCAAAAAATGATGATAAAGACAACGGATTATCTGGAGTAGTGAAGCCTGTTTCAGTTCCAAAGGAAGAATCAGTTCCAAAGGAGGAAGAAGAGAAAGTTTTGAATAAACCGAAAAACTCAAGGAAGCATGTGGAAATAAAAAAAGAGAAAGTTTTGAATAATGCGAAAAACTCAAGGAAGCCTGTGGAAATAAAAAAAGCAGCTCTTTGTAATGATGCAGCAGATCAGGGGGGTGGCTCAGAAAAGCAGAAGGTTGCTAGGACTGTTATATTTGGTGGTCTCATAAATTCTGCTATGGCTGAAGATGTTCACCGCCAAGCCAGAGATATTGGTACTGTGTGTTCTATCAAGTATCCCCTTTCAAGAAATGATCTTCAGCAACATGGTCTGCTGCAAGATGGCTGTACTTCAGATGCTTCAGCTGTACTATATACAAGTGTAAAATCAGCTCGTGCTTCCGTTGCAAAATTGCATAAAAAAGAGATAGGAGGGGGAACTGTTTGGGCACGACAACTTGGCGGTGAGGGCGCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCCAAAGAAAATGAAATAAGTGATGCATTTTCATCTGCGGGGCCTGTTTGGGAGGTATTCATTCCACAGAAGTCTGACACAGGTCTTTCAAAGGGTTTTGCATTTGTAAAATTCACCTGCAAGCAAGATGCTGAAAATGCCATTAAAAAACTCAATGGATCAAAGTTTGGGAGTCGTCTCATAGCTGTTGACTGGGCTGTTCCAAAAAAGATATTTAGTAGTGATACCAATGATGCTCCTGCTTCAGAGGAAGGACAACAAAAGGTGACAGATGAAGATGATAGTACTACTACTGAGGATGATGTTGAGCATAGTGACAAACAATCTGATCATGAAGATGATAGTGATGTTGATAGTGTCGTGGAGGAAGATGTTCCTTCTGGAGATGATTTTGACAAGGAAGCAGACATTGCAAGAAAGGTTCTTAACAACTTGATTACGTCCTCCTCTGCCAAAGATGTGTCTGCAGATAACGATTCTACACGTTCTGAAGAAAATAAGGAGCCAAAATCCAACGAAATTGTTAAGGGCGCAGATAGTAAAGCATCTAAAGAGTCTGACAAGGTTTCTGCTATTTCTAAGCCCGAGACTTCCAGCAGGTTATCTAAACCTAAGGAATCAGAAGATGATTTGCAAAGAACAGTTTTTATAAGCAATATTCCCTTTGAATGTGATATCGAAGAAGTGAAGCAAAGGTTTTCTGCATTTGGAGTAGTAGAGTATTTTGCTCCTGTTCTCCACCAATTGACCAAGCGTCCACGAGGGACTGGTTTTCTTAAGTTTAAAACTGTGGAAGCAGCTGATAATGCGATTTCAGCTGCCAATGCTGCTTCTGGGATGGGTATTTTAGTGAAGGGTAGACCATTAAAAGTTTTAAAAGCTCTGGACAGGAAATCAGCTCATGAAAAGGAACTGGAGAAAGAAAAAAATGAGGTTCATGACCACCGCAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGCCGGGACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATAGCAAAGCGCAAAGATTTGGAAAGGAAAAAGAAGACGAAGCTTCAATCTCCAAATTTCCATGTTTCAAAAACTAGACTTGTTATCTACAACTTACCGAAGTCCATGACTGAAAAACAACTAAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGACAGATAAAGATTTTGAAAGATGGAAGGAAAGGAAAGGCTACTCAAGAACAACAGTATTCCCGTGGAGTCGCCTTTCTTGAATTTTCAGAGCATCAGCATGCCCTTGTTGCTTTGAGAGTTCTTAACAATAATCCTGAAACTTTTGGTCCTGAACACCGGCCAATTGTGGAGTTTGCTCTTGATAATGTTCAAACATTGAAACTACGTAATGCAAAGCTACAATATCAGCAGCAGGCTCCTCGTGATGACAACAGAAATGAAAATGATAAACCCGACAATGAAGGAGGTTACACACATGGAACCGACAGGAAACGAAAATCTCAAGAGCACAACATACCAGCAAAAGACTCAGGATTGACTTCAAATAGTGAACAAAGCGGTAAAGTGGCAAATGGAAAACCTCCTCATGGAGACAAAACCAAAAGACAGAAAGGCAACCATAAGAGTACCAATACTGACATGTTATCATCGAAAGAAAGTCTGAAAGCTTCGGCGAGGAAGTCAAAGAATAATGATGATGGCCAGAATCACGGTGGTAAATTACATGAAGGTAAAAATACTGCCATTGACAGTAATAATATGAAAATATCAGGAAAGAAAGATGACGTGGTATATGGAAAGAGGAAGATGCAAAACCGAGAACAAGCAGGGGAAAAGGTTTCTAGGAAAAGGGCAAAGAAGAATAAAGATTCAATAGGGAAGGACACAGTAGATAAGCTTGATATGCTTATAGAACAATATAAATCCAAGTTCTCACAAAAGGGTTCCCAAGGAAATGATGGTGAGAAAAAACAACCTCAACAACAGCTTAGAAAATGGTACCAATCATAA 2970 0.4047 MGKKNKAMRENSDGTIKQCPLTLFVANLPYSFTNSQLAETFSEVGPVRRCFMVTPKGSDQHRGFGYVTFAVEKDADTAVELKNGSLVGGRKISVKHAMPRPPREKKSKPDQEGNKDDLTESKNDDKDNGLSGVVKPVSVPKEESVPKEEEEKVLNKPKNSRKHVEIKKEKVLNNAKNSRKPVEIKKAALCNDAADQGGGSEKQKVARTVIFGGLINSAMAEDVHRQARDIGTVCSIKYPLSRNDLQQHGLLQDGCTSDASAVLYTSVKSARASVAKLHKKEIGGGTVWARQLGGEGAKTQKWKLIVRNLPFKAKENEISDAFSSAGPVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIKKLNGSKFGSRLIAVDWAVPKKIFSSDTNDAPASEEGQQKVTDEDDSTTTEDDVEHSDKQSDHEDDSDVDSVVEEDVPSGDDFDKEADIARKVLNNLITSSSAKDVSADNDSTRSEENKEPKSNEIVKGADSKASKESDKVSAISKPETSSRLSKPKESEDDLQRTVFISNIPFECDIEEVKQRFSAFGVVEYFAPVLHQLTKRPRGTGFLKFKTVEAADNAISAANAASGMGILVKGRPLKVLKALDRKSAHEKELEKEKNEVHDHRNLYLAKEGLILAGTPAAEGVSASDIAKRKDLERKKKTKLQSPNFHVSKTRLVIYNLPKSMTEKQLKKLCIDAVISRATKQKPVIRQIKILKDGRKGKATQEQQYSRGVAFLEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRNAKLQYQQQAPRDDNRNENDKPDNEGGYTHGTDRKRKSQEHNIPAKDSGLTSNSEQSGKVANGKPPHGDKTKRQKGNHKSTNTDMLSSKESLKASARKSKNNDDGQNHGGKLHEGKNTAIDSNNMKISGKKDDVVYGKRKMQNREQAGEKVSRKRAKKNKDSIGKDTVDKLDMLIEQYKSKFSQKGSQGNDGEKKQPQQQLRKWYQS 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04209 989 CDD RRM2_RBM28_like 303 379 - -
Trre9g04209 989 Coils Coil 603 630 - -
Trre9g04209 989 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 525 608 IPR000504 GO:0003723
Trre9g04209 989 Gene3D - 2 113 IPR012677 -
Trre9g04209 989 Gene3D - 456 623 IPR012677 -
Trre9g04209 989 CDD RRM4_RBM28_like 677 775 - -
Trre9g04209 989 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Trre9g04209 989 MobiDBLite consensus disorder prediction 469 503 - -
Trre9g04209 989 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 380 IPR000504 GO:0003723
Trre9g04209 989 MobiDBLite consensus disorder prediction 385 446 - -
Trre9g04209 989 MobiDBLite consensus disorder prediction 908 958 - -
Trre9g04209 989 MobiDBLite consensus disorder prediction 97 129 - -
Trre9g04209 989 MobiDBLite consensus disorder prediction 427 442 - -
Trre9g04209 989 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 92 IPR000504 GO:0003723
Trre9g04209 989 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 527 588 IPR000504 GO:0003723
Trre9g04209 989 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 373 IPR000504 GO:0003723
Trre9g04209 989 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 677 791 IPR000504 GO:0003723
Trre9g04209 989 MobiDBLite consensus disorder prediction 873 897 - -
Trre9g04209 989 MobiDBLite consensus disorder prediction 141 165 - -
Trre9g04209 989 MobiDBLite consensus disorder prediction 847 861 - -
Trre9g04209 989 MobiDBLite consensus disorder prediction 90 165 - -
Trre9g04209 989 MobiDBLite consensus disorder prediction 788 989 - -
Trre9g04209 989 Gene3D - 676 772 IPR012677 -
Trre9g04209 989 MobiDBLite consensus disorder prediction 795 825 - -
Trre9g04209 989 MobiDBLite consensus disorder prediction 826 842 - -
Trre9g04209 989 SUPERFAMILY RNA-binding domain, RBD 22 288 IPR035979 GO:0003676
Trre9g04209 989 CDD RRM1_RBM28_like 22 100 - -
Trre9g04209 989 MobiDBLite consensus disorder prediction 412 426 - -
Trre9g04209 989 MobiDBLite consensus disorder prediction 962 989 - -
Trre9g04209 989 SMART rrm1_1 678 770 IPR000504 GO:0003723
Trre9g04209 989 SMART rrm1_1 526 604 IPR000504 GO:0003723
Trre9g04209 989 SMART rrm1_1 22 95 IPR000504 GO:0003723
Trre9g04209 989 SMART rrm1_1 303 376 IPR000504 GO:0003723
Trre9g04209 989 SUPERFAMILY RNA-binding domain, RBD 298 383 IPR035979 GO:0003676
Trre9g04209 989 FunFam RNA-binding motif protein 28 676 772 - -
Trre9g04209 989 PANTHER RNA-BINDING MOTIF PROTEIN 14B 19 989 - -
Trre9g04209 989 Gene3D - 289 417 IPR012677 -
Trre9g04209 989 SUPERFAMILY RNA-binding domain, RBD 525 756 IPR035979 GO:0003676
Trre9g04209 989 MobiDBLite consensus disorder prediction 463 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04209 Trre-Chr9 49843293 49850856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04209 306 381 Eukaryotic Initiation Factors Gene Family AT3G11400 36.842 5.64e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04209 K14573 - gmx:100794821 1269.22