Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04208 ATGGGAAAGAAAAACAAAGCGATGAGAGAAAATAGCGACGGCACTATTAAACAATGCCCCTTAACTCTTTTCGTTGCAAATTTACCCTACTCTTTTACAAATTCTCAGCTTGCAGAAACATTCAGTGAAGTTGGACCTGTTAGACGTTGTTTCATGGTTACACCAAAGGGGTCTGACCAACATCGTGGTTTCGGTTATGTTACATTTGCTGTTGAGAAAGACGCTGACACCGCCGTTGAGCTGAAGAATGGTTCATTGGTTGGTGGCCGAAAGATTTCAGTGAAGCACGCAATGCCTCGTCCACCCCGTGAAAAGAAATCAAAACCAGATCAAGAGGGCAATAAAGATGATCTCACAGAGTCAAAAAATGATGATAAAGACAACGGATTATCTGGAGTAGTGAAGCCTGTTTCAGTTCCAAAGGAAGAATCAGTTCCAAAGGAGGAAGAAGAGAAAGTTTTGAATAAACCGAAAAACTCAAGGAAGCATGTGGAAATAAAAAAAGAAGAGAAAGTTTTGAATAATGCGAAAAACTCAAGGAAGCCTGTGGAAATAAAAAAAGCAGCTCTTTGTAATGATGCAGCAGATCAGGGGGGTGGCTCAGAAAAGCAGAAGGTTGCTAGGACTGTTATATTTGGTGGTCTCATAAATTCTGCTATGGCTGAAGATGTTCACCGCCAAGCCAGAGATATTGGTACTGTGTGTTCTATCAAGTATCCCCTTTCAAGAAATGATCTTCAGCAACATGGTCTGCTGCAAGATGGCTGTACTTCAGATGCTTCAGCTGTACTATATACAAGTGTAAAATCAGCTCGTGCTTCCGTTGCAAAATTGCATAAAAAAGAGATAGGAGGGGGAACTGTTTGGGCACGACAACTTGGCGGTGAGGGCGCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCCAAAGAAAATGAAATAAGTGATGCATTTTCATCTGCGGGGCCTGTTTGGGAGGTATTCATTCCACAGAAGTCTGACACAGGTCTTTCAAAGGGTTTTGCATTTGTAAAATTCACCTGCAAGCAAGATGCTGAAAATGCCATTAAAAAACTCAATGGATCAAAGTTTGGGAGTCGTCTCATAGCTGTTGACTGGGCTGTTCCAAAAAAGATATTTAGTAGTGATACCAATGATGCTCCTGCTTCAGAGGAAGGACAACAAAAGGTGACAGATGAAGATGATAGTACTACTACTGAGGATGATGTTGAGCATAGTGACAAACAATCTGATCATGAAGATGATAGTGATGTTGATAGTGTCGTGGAGGAAGATGTTCCTTCTGGAGATGATTTTGACAAGGAAGCAGACATTGCAAGAAAGGTTCTTAACAACTTGATTACGTCCTCCTCTGCCAAAGATGTGTCTGCAGATAACGATTCTACACGTTCTGAAGAAAATAAGGAGCCAAAATCCAACGAAATTGTTAAGGGCGCAGATAGTAAAGCATCTAAAGAGTCTGACAAGGTTTCTGCTATTTCTAAGCCCGAGACTTCCAGCAGGTTATCTAAACCTAAGGAATCAGAAGATGATTTGCAAAGAACAGTTTTTATAAGCAATATTCCCTTTGAATGTGATATCGAAGAAGTGAAGCAAAGGTTTTCTGCATTTGGAGTAGTAGAGTATTTTGCTCCTGTTCTCCACCAATTGACCAAGCGTCCACGAGGGACTGGTTTTCTTAAGTTTAAAACTGTGGAAGCAGCTGATAATGCGATTTCAGCTGCCAATGCTGCTTCTGGGATGGGTATTTTAGTGAAGGGTAGACCATTAAAAGTTTTAAAAGCTCTGGACAGGAAATCAGCTCATGAAAAGGAACTGGAGAAAGAAAAAAATGAGGTTCATGACCACCGCAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGCCGGGACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATAGCAAAGCGCAAAGATTTGGAAAGGAAAAAGAAGACGAAGCTTCAATCTCCAAATTTCCATGTTTCAAAAACTAGACTTGTTATCTACAACTTACCGAAGTCCATGACTGAAAAACAACTAAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGACAGATAAAGATTTTGAAAGATGGAAGGAAAGGAAAGGCTACTCAAGAACAACAGTATTCCCGTGGAGTCGCCTTTCTTGAATTTTCAGAGCATCAGCATGCCCTTGTTGCTTTGAGAGTTCTTAACAATAATCCTGAAACTTTTGGTCCTGAACACCGGCCAATTGTGGAGTTTGCTCTTGATAATGTTCAAACATTGAAACTACGTAATGCAAAGCTACAATATCAGCAGCAGGCTCCTCGTGATGACAACAGAAATGAAAATGATAAACCCGACAATGAAGGAGGTTACACACATGGAACCGACAGGAAACGAAAATCTCAAGAGCACAACATACCAGCAAAAGACTCAGGATTGACTTCAAATAGTGAACAAAGCGGTAAAGTGGCAAATGGAAAACCTCCTCATGGAGACAAAACCAAAAGACAGAAAGGCAACCATAAGAGTACCAATACTGACATGTTATCATCGAAAGAAAGTCTGAAAGCTTCGGCGAGGAAGTCAAAGAATAATGATGATGGCCAGAATCACGGTGGTAAATTACATGAAGGTAAAAATACTGCCATTGACAGTAATAATATGAAAATATCAGGAAAGAAAGATGACGTGGTATATGGAAAGAGGAAGATGCAAAACCGAGAACAAGCAGGGGAAAAGGTTTCTAGGAAAAGGGCAAAGAAGAATAAAGATTCAATAGGGAAGGACACAGTAGATAAGCTTGATATGCTTATAGAACAATATAAATCCAAGTTCTCACAAAAGGGTTCCCAAGGAAATGATGGTGAGAAAAAACAACCTCAACAACAGCTTAGAAAATGGTACCAATCATAA 2973 0.4046 MGKKNKAMRENSDGTIKQCPLTLFVANLPYSFTNSQLAETFSEVGPVRRCFMVTPKGSDQHRGFGYVTFAVEKDADTAVELKNGSLVGGRKISVKHAMPRPPREKKSKPDQEGNKDDLTESKNDDKDNGLSGVVKPVSVPKEESVPKEEEEKVLNKPKNSRKHVEIKKEEKVLNNAKNSRKPVEIKKAALCNDAADQGGGSEKQKVARTVIFGGLINSAMAEDVHRQARDIGTVCSIKYPLSRNDLQQHGLLQDGCTSDASAVLYTSVKSARASVAKLHKKEIGGGTVWARQLGGEGAKTQKWKLIVRNLPFKAKENEISDAFSSAGPVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIKKLNGSKFGSRLIAVDWAVPKKIFSSDTNDAPASEEGQQKVTDEDDSTTTEDDVEHSDKQSDHEDDSDVDSVVEEDVPSGDDFDKEADIARKVLNNLITSSSAKDVSADNDSTRSEENKEPKSNEIVKGADSKASKESDKVSAISKPETSSRLSKPKESEDDLQRTVFISNIPFECDIEEVKQRFSAFGVVEYFAPVLHQLTKRPRGTGFLKFKTVEAADNAISAANAASGMGILVKGRPLKVLKALDRKSAHEKELEKEKNEVHDHRNLYLAKEGLILAGTPAAEGVSASDIAKRKDLERKKKTKLQSPNFHVSKTRLVIYNLPKSMTEKQLKKLCIDAVISRATKQKPVIRQIKILKDGRKGKATQEQQYSRGVAFLEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRNAKLQYQQQAPRDDNRNENDKPDNEGGYTHGTDRKRKSQEHNIPAKDSGLTSNSEQSGKVANGKPPHGDKTKRQKGNHKSTNTDMLSSKESLKASARKSKNNDDGQNHGGKLHEGKNTAIDSNNMKISGKKDDVVYGKRKMQNREQAGEKVSRKRAKKNKDSIGKDTVDKLDMLIEQYKSKFSQKGSQGNDGEKKQPQQQLRKWYQS 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04208 990 MobiDBLite consensus disorder prediction 963 990 - -
Trre9g04208 990 Gene3D - 677 773 IPR012677 -
Trre9g04208 990 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Trre9g04208 990 MobiDBLite consensus disorder prediction 464 523 - -
Trre9g04208 990 MobiDBLite consensus disorder prediction 789 990 - -
Trre9g04208 990 MobiDBLite consensus disorder prediction 796 826 - -
Trre9g04208 990 MobiDBLite consensus disorder prediction 874 898 - -
Trre9g04208 990 MobiDBLite consensus disorder prediction 97 129 - -
Trre9g04208 990 MobiDBLite consensus disorder prediction 827 843 - -
Trre9g04208 990 MobiDBLite consensus disorder prediction 470 504 - -
Trre9g04208 990 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 92 IPR000504 GO:0003723
Trre9g04208 990 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 528 589 IPR000504 GO:0003723
Trre9g04208 990 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 374 IPR000504 GO:0003723
Trre9g04208 990 MobiDBLite consensus disorder prediction 386 447 - -
Trre9g04208 990 SMART rrm1_1 527 605 IPR000504 GO:0003723
Trre9g04208 990 SMART rrm1_1 679 771 IPR000504 GO:0003723
Trre9g04208 990 SMART rrm1_1 22 95 IPR000504 GO:0003723
Trre9g04208 990 SMART rrm1_1 304 377 IPR000504 GO:0003723
Trre9g04208 990 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 678 792 IPR000504 GO:0003723
Trre9g04208 990 PANTHER RNA-BINDING MOTIF PROTEIN 14B 19 990 - -
Trre9g04208 990 FunFam RNA-binding motif protein 28 677 773 - -
Trre9g04208 990 CDD RRM4_RBM28_like 678 776 - -
Trre9g04208 990 MobiDBLite consensus disorder prediction 90 178 - -
Trre9g04208 990 Gene3D - 291 416 IPR012677 -
Trre9g04208 990 MobiDBLite consensus disorder prediction 909 959 - -
Trre9g04208 990 SUPERFAMILY RNA-binding domain, RBD 299 384 IPR035979 GO:0003676
Trre9g04208 990 CDD RRM1_RBM28_like 22 100 - -
Trre9g04208 990 CDD RRM2_RBM28_like 304 380 - -
Trre9g04208 990 Coils Coil 604 631 - -
Trre9g04208 990 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 381 IPR000504 GO:0003723
Trre9g04208 990 MobiDBLite consensus disorder prediction 848 862 - -
Trre9g04208 990 MobiDBLite consensus disorder prediction 413 427 - -
Trre9g04208 990 Gene3D - 2 113 IPR012677 -
Trre9g04208 990 Gene3D - 456 623 IPR012677 -
Trre9g04208 990 SUPERFAMILY RNA-binding domain, RBD 22 289 IPR035979 GO:0003676
Trre9g04208 990 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 526 609 IPR000504 GO:0003723
Trre9g04208 990 MobiDBLite consensus disorder prediction 428 443 - -
Trre9g04208 990 SUPERFAMILY RNA-binding domain, RBD 526 757 IPR035979 GO:0003676
Trre9g04208 990 MobiDBLite consensus disorder prediction 141 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04208 Trre-Chr9 49843293 49850856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04208 307 382 Eukaryotic Initiation Factors Gene Family AT3G11400 36.842 5.75e-11 63.2