Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04204 ATGACAATTGGGTTCATGGAAGTGCTTCTGGTGAAAGCAAAGGGTCTTCAAGAAACTGATGTCTTTGCTCGCATGGATCCGTATGTTGTGTTACAATACAAAAGTCAAGAGAAAAAGAGCAGTGTTGTTCATGAGGGGGGTAGGAGTCCTGTATGGAATGAGAAGTTTGTATTCAGAGTGGAATACCCTGGATCAGGTGACCAATACAAGCTCAACCTTAAAATCATGGACAAGGATGTTTTTTCTAGAGATGATTTTGTTGGCCAAGCCATAATCTATGTAAAAGATTTATTCGTGGAAGGAGTAGAGAACGGATCAGCTGAGCTTCGTCCTCGCAAGTATAGTGTGGTTCGAGCTGACAATTCTTATTGCGGTGAAATTGAAGTTGGTTTAACATTTACTCGAAAGGAAGATGAATATGCCAACGATGACTTTGGAGGATGGAAGGATAGTGAATATTAA 462 0.4048 MTIGFMEVLLVKAKGLQETDVFARMDPYVVLQYKSQEKKSSVVHEGGRSPVWNEKFVFRVEYPGSGDQYKLNLKIMDKDVFSRDDFVGQAIIYVKDLFVEGVENGSAELRPRKYSVVRADNSYCGEIEVGLTFTRKEDEYANDDFGGWKDSEY 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04204 153 CDD C2_putative_Elicitor-responsive_gene 4 127 - -
Trre9g04204 153 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Trre9g04204 153 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 137 IPR035892 -
Trre9g04204 153 PANTHER C2 DOMAIN-CONTAINING 3 138 - -
Trre9g04204 153 Pfam C2 domain 7 105 IPR000008 -
Trre9g04204 153 SMART C2_3c 5 106 IPR000008 -
Trre9g04204 153 Gene3D C2 domain 3 135 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04204 Trre-Chr9 49797649 49800170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04204 3 109 C2H2 Transcription Factor Family AT4G21160 31.776 2.09e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04204 - - gmx:100500493 270.781