Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04202 ATGCGGAGGAACAGTCCAGGTTACTACAGTCCTCCCCGGAGAGGATACGGCGGAAGAGGACCTAGTAGGAGAGGAGGATACGGTGGTGGTGGTGGTGGAGGTGGAGGTGGTGGTAGGCGTAGAGAAAGCAACAATGGAAGTCTTTTGGTTCGGAACATTCCTTTAGATTGTAGACCTGAGGAACTTCGAGCACCGTTCGAGCGATTTGGACCGGTTCGTGATGTTTACATACCGAAGGATTATTACTCTGGACAACCTCGAGGCTTTGCATTCGTGCAGTTTGTGGATTCATATGAGGCCTCCGAGGCGCAGTACCATATGGACAGACAGATTTTTGCTGGCAGGGAAATATCTGTAGTTGTGGCTGCAGAGACAAGAAAAAGGCCAGAGGAGATGCGTCATAGGACTAGTAGGTCCAGAGGACCAGGGAGCTATGGGGGGCAAAGGTCTTCCTACCATGGGCGTTCTCGATCTCGTTCAATTTCCAGATCAAGATCACCTCCTTATCACTCTGGTTCTAGAAACCGCTATCGATCAAGGTCCAGGTCGTTCTCTCCTCCCCCAAGACGCCAAGGTGACTACTCTGTTTCCCCTAGAAGGCATGCAGAACGCCCTAGATCACCTAGAAGCCCTCCTAGAAGCCCTCCTAGAAGTCCTCTTGTGGATCGAGATGGGGATCATAAACGCAGGTCGTATTCTCCAGCTTATGGTGCTGATCAGAATCCAAGCAATGGATATGCTGAGAAATTGTACAAATCTGAAGCTGATCGAGGCTGGAAGTCATCGGTACAAAGAACATCAAGATCACCCCCTGGATCTAGATCTAGATCAAGATCTGTTGATTTGTCTCCTAGACGTGGAAGATGA 867 0.4983 MRRNSPGYYSPPRRGYGGRGPSRRGGYGGGGGGGGGGGRRRESNNGSLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDSYEASEAQYHMDRQIFAGREISVVVAAETRKRPEEMRHRTSRSRGPGSYGGQRSSYHGRSRSRSISRSRSPPYHSGSRNRYRSRSRSFSPPPRRQGDYSVSPRRHAERPRSPRSPPRSPPRSPLVDRDGDHKRRSYSPAYGADQNPSNGYAEKLYKSEADRGWKSSVQRTSRSPPGSRSRSRSVDLSPRRGR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04202 288 MobiDBLite consensus disorder prediction 262 278 - -
Trre9g04202 288 MobiDBLite consensus disorder prediction 1 47 - -
Trre9g04202 288 MobiDBLite consensus disorder prediction 194 210 - -
Trre9g04202 288 Gene3D - 38 161 IPR012677 -
Trre9g04202 288 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 39 181 - -
Trre9g04202 288 SUPERFAMILY RNA-binding domain, RBD 42 152 IPR035979 GO:0003676
Trre9g04202 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 117 IPR000504 GO:0003723
Trre9g04202 288 MobiDBLite consensus disorder prediction 141 190 - -
Trre9g04202 288 SMART rrm1_1 47 120 IPR000504 GO:0003723
Trre9g04202 288 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 40 252 - -
Trre9g04202 288 MobiDBLite consensus disorder prediction 125 288 - -
Trre9g04202 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 124 IPR000504 GO:0003723
Trre9g04202 288 MobiDBLite consensus disorder prediction 219 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04202 Trre-Chr9 49791917 49794958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04202 36 108 Eukaryotic Initiation Factors Gene Family AT3G11400 35.616 4.89e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04202 K12900 - gmx:100804294 300.827