Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04194 ATGAGAACACCTTGTTGTGACAAAGAAAACATTAACAAAGGTGCTTGGTCTAAGCAAGAAGATAAAAAGCTCATTGACTATATACAAGTTCATGGTGAAGGATGTTGGGGATCCATTCCTAAGGCTGCTGGGTTGCATCGTTGTGGCAAAAGTTGTAGACTAAGATGGTTAAACTATTTGCGACCGGATATCAAACGTGGTATCTTTGCTCAAGATGAAGAAGACCTCATCATCAAACTTCATGCCCTCCTTGGCAATCGGTGGGCACTCATTGCTGGAAGGTTGCCTGGACGTACAGATAATGAAGTGAAGAACTATTGGAATTCTCATATTCGTAGAAAGCTAATAAAAATGGGAATTGATCCAAATAATCACAAGTTACACAAAGGTTTTCCTAGTCCTCATCATGTTTTTGCTGCTGGGACATCATCATCATCATGTGACAAAGAAAGAAACATCAATAACCTCACATTAATCAAATCTAAATCATGTGAAGAAGAGTACATTAATAGTAGTGTTTCTTTCACAAAGAAAGAAACATCAATAATTAATAATTCTTCTTCTTCTTTGAATCTTGAGCTAACCATTGCTTTACCTTCTCCAAATGATTGTGAGTCTCCAAAGATTAGGGATATAGATATTGATCTTAATTGTTAA 657 0.3638 MRTPCCDKENINKGAWSKQEDKKLIDYIQVHGEGCWGSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGIFAQDEEDLIIKLHALLGNRWALIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKLHKGFPSPHHVFAAGTSSSSCDKERNINNLTLIKSKSCEEEYINSSVSFTKKETSIINNSSSSLNLELTIALPSPNDCESPKIRDIDIDLNC 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04194 218 Gene3D - 13 65 - -
Trre9g04194 218 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Trre9g04194 218 Gene3D - 68 130 - -
Trre9g04194 218 CDD SANT 71 111 IPR001005 -
Trre9g04194 218 SMART sant 65 113 IPR001005 -
Trre9g04194 218 SMART sant 12 62 IPR001005 -
Trre9g04194 218 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Trre9g04194 218 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Trre9g04194 218 FunFam MYB transcription factor 67 128 - -
Trre9g04194 218 CDD SANT 15 60 IPR001005 -
Trre9g04194 218 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Trre9g04194 218 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Trre9g04194 218 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Trre9g04194 218 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 183 - -
Trre9g04194 218 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Trre9g04194 218 FunFam MYB-related transcription factor 12 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04194 Trre-Chr9 49703257 49704870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04194 2 203 MYB Transcription Factor Family AT4G38620 52.315 3.26e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre9g04194 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04194 K09422 - gmx:100306391 316.235