Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04188 ATGATTGAAGAAGAAGATGGTTCACAAAGTACTAATGGATTAAGCAATGATTCAGCTTCAGCTTCAGCTTCTGCTACTACAAATTCTACTACCATTTGTGGTAGTAGCAAAAAAGGGTATGTTTATAACAATACAAGTTATGAACTTGATGAAGAAGAGTCTTTGATTAATTTCAAAGGCAATGATGAGTACTATAATAATCTCATGCATGGTAGTGAATCTTTGCTTAGTTTTCAGCAGAGTTGGAATATGGTCTCTAATGAGAACAATTTGCATCAATGGAATCATGTTAGTCCTAATTTCAATAACTTTGAAACTTCTAGTGAATCCTATGGATCTATATTCAATAGTACTAAAGAGAAGCAAAATGGTGAAAGTTCATGTGGGTGGTTATATTCTGAACCAAATGTCCCTTGTGATGATGATGATGGCGTAATAAACGAGTCAGAAACACATGATTCGGTCTTGAAGAAGCGCCCTTCGATGGGAGAGAATATGCAACCTGGCAATGCCAAGAAACCATGCACAAATGCAAGTAAAAAAGAAAAACCTAAGTCAAATCCTTCTAAGGATCCTCAAAGTGTTGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAGAGGCTCAAGATCCTACAAGAACTTGTACCAAACGGTTCCAAGGTTGATTTGGTTACCATGTTGGAAAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTACAAGTCAAGGTGTTGGCAGCTGATGAATTTTGGCCAGTTAATGGTGGAAAAGCTCCTGACATTGGTCAAGTAAAGCAAGCAATTGATGCAATTCTTTCATCTCCAAGATGA 828 0.3684 MIEEEDGSQSTNGLSNDSASASASATTNSTTICGSSKKGYVYNNTSYELDEEESLINFKGNDEYYNNLMHGSESLLSFQQSWNMVSNENNLHQWNHVSPNFNNFETSSESYGSIFNSTKEKQNGESSCGWLYSEPNVPCDDDDGVINESETHDSVLKKRPSMGENMQPGNAKKPCTNASKKEKPKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVNGGKAPDIGQVKQAIDAILSSPR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04188 275 Pfam Helix-loop-helix DNA-binding domain 198 238 IPR011598 GO:0046983
Trre9g04188 275 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 32 245 IPR045843 GO:0003700|GO:0006355
Trre9g04188 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 188 237 IPR011598 GO:0046983
Trre9g04188 275 SMART finulus 194 243 IPR011598 GO:0046983
Trre9g04188 275 FunFam Transcription factor bHLH83 186 245 - -
Trre9g04188 275 MobiDBLite consensus disorder prediction 139 200 - -
Trre9g04188 275 CDD bHLH_AtIND_like 189 251 - -
Trre9g04188 275 Gene3D - 182 245 IPR036638 GO:0046983
Trre9g04188 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 246 IPR036638 GO:0046983
Trre9g04188 275 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04188 Trre-Chr9 49651524 49653432 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04188 92 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 58.824 2.58e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre9g04188 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04188 - - gmx:106795957 362.844