Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04187 ATGGCACTAACCAACAACAACATTCTACATAGTTCAATCCTAAGTAAAAAGTTTCAATCTTGTGTTTTTGATGAAACTACTATAGAGATTAACTCTATAATGTCTCATAAAAAATCTATGATTGAAGAAGAAGATGGTTCACAAAGTACTAATGGATTAAGCAATGATTCAGCTTCAGCTTCAGCTTCTGCTACTACAAATTCTACTACCATTTGTGGTAGTAGCAAAAAAGGGTATGTTTATAACAATACAAGTTATGAACTTGATGAAGAAGAGTCTTTGATTAATTTCAAAGGCAATGATGAGTACTATAATAATCTCATGCATGGTAGTGAATCTTTGCTTAGTTTTCAGCAGAGTTGGAATATGGTCTCTAATGAGAACAATTTGCATCAATGGAATCATGTTAGTCCTAATTTCAATAACTTTGAAACTTCTAGTGAATCCTATGGATCTATATTCAATAGTACTAAAGAGAAGCAAAATGGTGAAAGTTCATGTGGGTGGTTATATTCTGAACCAAATGTCCCTTGTGATGATGATGATGGCGTAATAAACGAGTCAGAAACACATGATTCGGTCTTGAAGAAGCGCCCTTCGATGGGAGAGAATATGCAACCTGGCAATGCCAAGAAACCATGCACAAATGCAAGTAAAAAAGAAAAACCTAAGTCAAATCCTTCTAAGGATCCTCAAAGTGTTGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAGAGGCTCAAGATCCTACAAGAACTTGTACCAAACGGTTCCAAGGTTGATTTGGTTACCATGTTGGAAAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTACAAGTCAAGGTGTTGGCAGCTGATGAATTTTGGCCAGTTAATGGTGGAAAAGCTCCTGACATTGGTCAAGTAAAGCAAGCAATTGATGCAATTCTTTCATCTCCAAGATGA 945 0.3577 MALTNNNILHSSILSKKFQSCVFDETTIEINSIMSHKKSMIEEEDGSQSTNGLSNDSASASASATTNSTTICGSSKKGYVYNNTSYELDEEESLINFKGNDEYYNNLMHGSESLLSFQQSWNMVSNENNLHQWNHVSPNFNNFETSSESYGSIFNSTKEKQNGESSCGWLYSEPNVPCDDDDGVINESETHDSVLKKRPSMGENMQPGNAKKPCTNASKKEKPKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVNGGKAPDIGQVKQAIDAILSSPR 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04187 314 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 40 284 IPR045843 GO:0003700|GO:0006355
Trre9g04187 314 Pfam Helix-loop-helix DNA-binding domain 237 277 IPR011598 GO:0046983
Trre9g04187 314 MobiDBLite consensus disorder prediction 45 68 - -
Trre9g04187 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 225 285 IPR036638 GO:0046983
Trre9g04187 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 227 276 IPR011598 GO:0046983
Trre9g04187 314 MobiDBLite consensus disorder prediction 39 68 - -
Trre9g04187 314 Gene3D - 221 284 IPR036638 GO:0046983
Trre9g04187 314 MobiDBLite consensus disorder prediction 178 239 - -
Trre9g04187 314 FunFam Transcription factor bHLH83 225 284 - -
Trre9g04187 314 SMART finulus 233 282 IPR011598 GO:0046983
Trre9g04187 314 CDD bHLH_AtIND_like 228 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04187 Trre-Chr9 49651407 49653432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04187 131 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 58.824 6.43e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre9g04187 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04187 - - gmx:106795957 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04187 9 49651407 49653432 Trre9g04187 9 49651407 49653432 ECH