Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04178 ATGGAGAATACCGAAGGATTGAGAAGAGGTACATGGACTCCTGAGGAAGATAAACTACTCAAAGCTTGCATTGAGAAGTATGGCGAAGGAAATTGGCATTTAGTTTCTGAGAGAGCTGGATTGAATAGGTGCCGAAAAAGTTGTAGATTGAGGTGGTTAAATTATTTAAAGCCCAATATTAATAGAGAAATCTTTTCTAAGGATGAAGTAGATTTGATCAAAAGGTTACACAGCCTCCTAGGAAACAAATGGTCATTGATTGCTGGAAGGCTTCCTGGTAGAACATCTAATGATGTGAAAAACTATTGGCACACACATCTGAAGAAGAAGGTGGTTTCCGAAGAAGAAGAAAAAGAAAAGACACAGAAGAAGAAACTTAAGGAAACTATGATATCTCATGAAGTTATTAAACCTAGAGCTATGTATCTTTCATCTAATTTTGGAAAACAACCAGTAATGGCTTCAAATCCAGACACACAGACAGCTAGGGTTCCAAATGAAATTGGTAATTGTTCTTCAGCTTCACAACCAAATCTAGGTAATGTCCCAATACCTAGTGAAATGTGGTCTGAAAGTTTTTGGAACTTTGCAAATGATTTAGATGATGATAGAATTGCATCATGCTCTTCCTTGCAAGAGAATAACTATCAGGAATATTCAAATGTTGATAATTCCTTTTGGGATTCCGACCATGGTGATTTCTATTCTCTTTGGGATCCATAG 723 0.3665 MENTEGLRRGTWTPEEDKLLKACIEKYGEGNWHLVSERAGLNRCRKSCRLRWLNYLKPNINREIFSKDEVDLIKRLHSLLGNKWSLIAGRLPGRTSNDVKNYWHTHLKKKVVSEEEEKEKTQKKKLKETMISHEVIKPRAMYLSSNFGKQPVMASNPDTQTARVPNEIGNCSSASQPNLGNVPIPSEMWSESFWNFANDLDDDRIASCSSLQENNYQEYSNVDNSFWDSDHGDFYSLWDP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04178 240 SMART sant 61 109 IPR001005 -
Trre9g04178 240 SMART sant 8 58 IPR001005 -
Trre9g04178 240 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Trre9g04178 240 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Trre9g04178 240 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Trre9g04178 240 Coils Coil 104 124 - -
Trre9g04178 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Trre9g04178 240 CDD SANT 11 56 IPR001005 -
Trre9g04178 240 Gene3D - 2 62 - -
Trre9g04178 240 FunFam Myb transcription factor 9 61 - -
Trre9g04178 240 CDD SANT 65 107 IPR001005 -
Trre9g04178 240 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Trre9g04178 240 Pfam Myb-like DNA-binding domain 65 107 IPR001005 -
Trre9g04178 240 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 172 - -
Trre9g04178 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 111 IPR017930 -
Trre9g04178 240 Gene3D - 64 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04178 Trre-Chr9 49588576 49589673 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04178 2 144 MYB Transcription Factor Family AT1G66370 58.940 7.47e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre9g04178 Myb_DNA-binding 7.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04178 - K09422 mtr:11424892 282.722