Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04177 ATGGAGAAGACTAGAGGCGTGAAAAAAGGGGCATGGACATACGAGGAAGACAAGCTACTCAAGGATTGCATTAACAAATATGGTGAAGGAAAATGGCATTTAGTTCCACAAAGAGCAGGATTGAATAGGTGCAGAAAAAGTTGTAGATTGAGGTGGTTAAACTATTTAAGCCCAAACATCAAAAGAGAACGTTTCGCTGAGGATGAAGTTGATATGATCATAAGGTTACACAAACTCCTAGGGAATAGATGGGCATTGCTTGCTGGAAGGCTTCCGGGTAGAACATCTAATGATGTGAAGAATTATTGGCACACACACTTGCAAAAGAAGATGGTATGTAGAAAATTAGAAGAAGAAAAAAGAGAAAAAGATAAGCCTAAGGAAACCATCAAAGCTCATGTAGTTTTTAAACCTCAACCTCGAACTTTCTCAACTCATTCACTTTGGTTGAATGGGAAACATAATAATATTGCGACACCGGTAGCAGTTGTTTCGACTAAAGATGACAATGCTCCGAGAGATCACGACGTCGATAAAGAGACTACAGTTTCAAATCAAATTGGTAATGTTGATGCTTCACAACCAAGTCTTGGTAATGCTCCAATACCGTGTGAAATGTGGTGGGATAGTTTATTGAACTTGGGGGAGCAAGAAGGTAGTAAGAAATTTGGGTCATGCTCTTTATTACAAGAGGAGAACTTTATTCTAGACTTTCCAAATGTGGATGAGAATGACTCCATTTGGGATTCCAACCTTTGTGATTTCAATTCTCTTTGGGATCTTTAG 786 0.388 MEKTRGVKKGAWTYEEDKLLKDCINKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLSPNIKRERFAEDEVDMIIRLHKLLGNRWALLAGRLPGRTSNDVKNYWHTHLQKKMVCRKLEEEKREKDKPKETIKAHVVFKPQPRTFSTHSLWLNGKHNNIATPVAVVSTKDDNAPRDHDVDKETTVSNQIGNVDASQPSLGNAPIPCEMWWDSLLNLGEQEGSKKFGSCSLLQEENFILDFPNVDENDSIWDSNLCDFNSLWDL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04177 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Trre9g04177 261 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Trre9g04177 261 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Trre9g04177 261 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Trre9g04177 261 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Trre9g04177 261 CDD SANT 67 107 IPR001005 -
Trre9g04177 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Trre9g04177 261 CDD SANT 11 56 IPR001005 -
Trre9g04177 261 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Trre9g04177 261 Gene3D - 2 62 - -
Trre9g04177 261 Gene3D - 64 134 - -
Trre9g04177 261 FunFam Myb transcription factor 9 61 - -
Trre9g04177 261 SMART sant 8 58 IPR001005 -
Trre9g04177 261 SMART sant 61 109 IPR001005 -
Trre9g04177 261 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04177 Trre-Chr9 49530236 49531875 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04177 2 144 MYB Transcription Factor Family AT1G66370 61.644 5.00e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre9g04177 Myb_DNA-binding 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04177 - K16166 mtr:11424892 334.724