Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04176 ATGGAGAAGAGTAAGACAAGATCAGGTGTAAGGAAAGGTGCATGGACATATGAAGAAGACAAGTTACTCAAATCTTGCATTAGCAAGTATGGTGAAGGAAAATGGCATTTAGTTCCTCAAAGAGCAGGATTGAATAGGTGTCGAAAAAGTTGTAGATTAAGGTGGCTAAATTATTTAAACCCCACTATCAACAAAGAAATTTTATCTGAAGATGAAGTTGATATGATGCTAAGGTTACACAAACTCTTAGGAAACAGATGGTCATTGATTGCTGGAAGGCTTCCTGGTAGAACAGCCAATTATGTGAAGAACTATTGGCACACACATTTGCAGAAGAAGATGGTTTCAAGAAAATTAGAAGAAAGCAAAGAAAAGGAGAAACTTGAGGAAACAGTTAAACCTCATGCAATTATTAAACCTCAACCCCTAACTTTCTCAGCAAATTCACCTTGGTTAAATAGGAAGTATATTAATTTTGTAACACCAATAGTGGCAGTTTCAACAAAAGATGGAACTGTTGCAAATGATCACATAGAGAATACTATGTTACCAATTAATGATACTGATGTAGATTGTGCTGCACAACCATATACTACAAATTCAACAATGTCTGCCATGTGGTGGGAGAATTTGTTAAATGTGGGCAATGACAAAATTGCCTCATCCTCTTTATTACAAGAGGATGACTCTAATTTGGAGTTTCCAAATGTTAACTTTCTTGAAGTCCCAAATGTTAATTATAGCAATTGGGATTCCAACCTCTATGAATTTGATTCTATTTTGGATATTTTAAATTAA 798 0.3471 MEKSKTRSGVRKGAWTYEEDKLLKSCISKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLNPTINKEILSEDEVDMMLRLHKLLGNRWSLIAGRLPGRTANYVKNYWHTHLQKKMVSRKLEESKEKEKLEETVKPHAIIKPQPLTFSANSPWLNRKYINFVTPIVAVSTKDGTVANDHIENTMLPINDTDVDCAAQPYTTNSTMSAMWWENLLNVGNDKIASSSLLQEDDSNLEFPNVNFLEVPNVNYSNWDSNLYEFDSILDILN 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04176 265 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 133 - -
Trre9g04176 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 114 IPR017930 -
Trre9g04176 265 Gene3D - 67 136 - -
Trre9g04176 265 SMART sant 64 112 IPR001005 -
Trre9g04176 265 SMART sant 11 61 IPR001005 -
Trre9g04176 265 FunFam Myb transcription factor 12 64 - -
Trre9g04176 265 CDD SANT 69 110 IPR001005 -
Trre9g04176 265 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Trre9g04176 265 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
Trre9g04176 265 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Trre9g04176 265 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Trre9g04176 265 CDD SANT 14 59 IPR001005 -
Trre9g04176 265 Gene3D - 12 65 - -
Trre9g04176 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Trre9g04176 265 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04176 Trre-Chr9 49521396 49524036 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04176 9 212 MYB Transcription Factor Family AT1G66370 47.489 9.52e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre9g04176 Myb_DNA-binding 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04176 - K09422 tpra:123921946 431.024