Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04175 ATGAAAAATACCAAAGGTGTGAGAAAAGGTGCATGGACATATGAGGAAGATAACCTACTCAAGACTTGCATTAACAAGTATGGTGAAGGAAAATGGCATTTGGTTCCTGAAAGAGCAGGATTGAATAGGTGCAGAAAAAGTTGTAGACTTAGGTGGTTAAATTATTTAAGCCCCAACATCAAAAGAGGAAGCTTTGCTGAAGATGAAATTGATATGATCATAAGGCTACACAATCTCCTAGGGAATAGATGGTCATTGATTGCTGGAAGGCTTCCTGGTAGAACATCCAATGATGTAAAGAATTATTGGAATGCACACTTGATTAATAAGGTGGTTTCAAAAAAAGAAGAGAAAATGAAAGAGAAACATAAGGAAACCATAGCTCATGAAGTTATTAAACCTCGACCTATAACTTTTTCAACTAATTCTCCTTGGTTGAAAGGAAAACATAATAATTTTGTGCCACAACCAATATTTTCTTCAAATAAAGATGATAAAATTCCTACATATCATGATGATCAATTGAAGACTATGGTTCCAAATCATATTGGTAGAGATTGTGCTTCTGCATCAAAACCAAGTCTAGGTAATGTGTCAATACCTTGTGCAATGTCAATGGACAGTTTATGGAACTTGGAGGAGCCTTTATGTGGTGAAATAATTGGATCATGCTCTTCATTTCAAGAGGAGAATTATAATATGGATTTTCCAAATGTTGATGATTCCTTTTGGGATAATCTTTGTGATTTTGATTCTCTTCTGGATCTTAATTACTAG 777 0.3449 MKNTKGVRKGAWTYEEDNLLKTCINKYGEGKWHLVPERAGLNRCRKSCRLRWLNYLSPNIKRGSFAEDEIDMIIRLHNLLGNRWSLIAGRLPGRTSNDVKNYWNAHLINKVVSKKEEKMKEKHKETIAHEVIKPRPITFSTNSPWLKGKHNNFVPQPIFSSNKDDKIPTYHDDQLKTMVPNHIGRDCASASKPSLGNVSIPCAMSMDSLWNLEEPLCGEIIGSCSSFQEENYNMDFPNVDDSFWDNLCDFDSLLDLNY 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04175 258 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Trre9g04175 258 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Trre9g04175 258 CDD SANT 67 107 IPR001005 -
Trre9g04175 258 CDD SANT 11 56 IPR001005 -
Trre9g04175 258 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 134 - -
Trre9g04175 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Trre9g04175 258 SMART sant 61 109 IPR001005 -
Trre9g04175 258 SMART sant 8 58 IPR001005 -
Trre9g04175 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Trre9g04175 258 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Trre9g04175 258 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Trre9g04175 258 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Trre9g04175 258 Gene3D - 64 133 - -
Trre9g04175 258 Gene3D - 1 62 - -
Trre9g04175 258 FunFam Myb transcription factor 9 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04175 Trre-Chr9 49502401 49505952 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04175 5 166 MYB Transcription Factor Family AT1G66370 54.255 3.88e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre9g04175 Myb_DNA-binding 6.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04175 - K16166 mtr:11424892 354.755