Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04145 ATGGAGATTCTGGGTCAAAAAGAAGAAATGCATTCTGTTGTACATGTACACAAACTACTTGATCAATTTTCATGTGGAAATGATTATGCCTTGAAGGTAAGGAAACCATATACTATCACAAAGCAAAGAGAAAAGTGGACAGATGAAGAACATAAGAAATTCCTTGAAGCTTTAAAGCTATACGGTCGAGCTTGGCGAAAAATCGAAGAACATGTTGGCACAAAGACTGCTGTGCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATCAATCGAGACACTAATGGAAACGACACAACAATGGTGGAGACGATTGAAATTCCGCCTCCACGACCAAAACGGAAGCCGATTCATCCTTATCCACGTAAACTAGTTGAAATCCCAAAGAATGAAATCTGCAACATGGAACAGCCACTGAGGTCGAATTCTCTTGTGTCGTTAGATTTTTGTCAAGAAAACAACTCGCCCAAGTCGGTACTATCTGCAGTTGCTTCAGAAACCCTCGGTTTCTCTGATTCGGATACTCCAACTGGAAGTTTGTCCCCTGTCTCATCTATTAGTGTTGTCCATACACATAGCTTTCCACTTCTTGAGTCCAAATCGTCATCATCCGAGGAAGATTTGTCTCAACAAATTGATGAACTGAATGCCGATTCAGCTCATGATGAACAGCCTCTAATGAAACTGGAGCTTTTCTCTAATGAGACCGTCTTTACCAAAGACGACGAAGCAACAGAAGAATCACCTCGTCGAACACTCAAACTTTTCGGAACAACTCTACTAGTAAACGATACTTGCAAACCTTCTTCTACATCAACAGATGCATCAAAACCGGTACCTTCCATGCATCTTACGCAACAACTTCAGCGTAGATGTTCAGATATTGATCTAGCAACCGTTGTTCCTTGGTGGACTCTCTCCGACAATTCAGCCTTTAAACCACCGCACAAGGATCACGAGGTCCAAAATTTACATTCTAATAACGGAGAATATGAAGATAAAGAAACTCAAAAGGAAGGATCATGTGTTGGTTCTAACACAAGTTCAATAAACGACGGTGAAAGCAATGAAAGAGAAAGCCAGTGTTCACCAATAAGACATAAAACATTTGGTAAAGGGTTTGTACCATATAAAAGATGCATGACAGAAAGAGAAAGTCATTGTTCAACAATAAAAGATGAGAGGAGAGAACATCAACGTATGAGGCTTTCTTTATAG 1221 0.4005 MEILGQKEEMHSVVHVHKLLDQFSCGNDYALKVRKPYTITKQREKWTDEEHKKFLEALKLYGRAWRKIEEHVGTKTAVQIRSHAQKFFSKINRDTNGNDTTMVETIEIPPPRPKRKPIHPYPRKLVEIPKNEICNMEQPLRSNSLVSLDFCQENNSPKSVLSAVASETLGFSDSDTPTGSLSPVSSISVVHTHSFPLLESKSSSSEEDLSQQIDELNADSAHDEQPLMKLELFSNETVFTKDDEATEESPRRTLKLFGTTLLVNDTCKPSSTSTDASKPVPSMHLTQQLQRRCSDIDLATVVPWWTLSDNSAFKPPHKDHEVQNLHSNNGEYEDKETQKEGSCVGSNTSSINDGESNERESQCSPIRHKTFGKGFVPYKRCMTERESHCSTIKDERREHQRMRLSL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04145 406 CDD SANT 45 88 IPR001005 -
Trre9g04145 406 ProSiteProfiles Myb-like domain profile. 38 88 IPR001005 -
Trre9g04145 406 FunFam protein REVEILLE 6 isoform X1 45 93 - -
Trre9g04145 406 SMART sant 42 90 IPR001005 -
Trre9g04145 406 Pfam Myb-like DNA-binding domain 43 86 IPR001005 -
Trre9g04145 406 PANTHER SWI/SNF COMPLEX-RELATED 26 348 - -
Trre9g04145 406 MobiDBLite consensus disorder prediction 329 368 - -
Trre9g04145 406 Gene3D - 45 92 - -
Trre9g04145 406 ProSiteProfiles SANT domain profile. 41 92 IPR017884 -
Trre9g04145 406 NCBIfam myb-like DNA-binding domain, SHAQKYF class 41 90 IPR006447 GO:0003677
Trre9g04145 406 SUPERFAMILY Homeodomain-like 37 93 IPR009057 -
Trre9g04145 406 MobiDBLite consensus disorder prediction 341 359 - -
Trre9g04145 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 92 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04145 Trre-Chr9 49288842 49291369 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre9g04145 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04145 - - gmx:778060 475.707