Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04141 ATGAGTCGTAAGAAGAATACTGTGCTTATTTCCGATCCACAAGTGTTCGATTGCTACAATTGCTATCAAACCTTAACTATTCCCGTCTTTCAATGTGATAATGGCCATATTGTTTGCTCGACCTGCTATCCTAAACTCAAGAACAAGTGTGGCAAGTGCTCATTGCGCATTAACTCAAAACGTTGTAAAGCCATTGAGAATATATTGCAATCAACGGAAATGCCATGTCCCAATGAAATACACGGTTGCAAGGAGAGGATAAGTTACCTTGGAAATGGGAAGCATGAGGAATGCATCCACGAGCCATGTTGCTGCCCCCTTTTAGGTTGTGATTATGTTGCATCTTCGAAGGTGTTGTCAAACCATTTCAGTCATAAACATGATGATTGTCAAATTTATTTTGATTATGGTCGCTCCTTCATTGTCTCTTTGAAGTCTAAGGATGAAACCATTGTTCTTCAAGAGGAAAGTGATGGCAAACTATTTATTCTCAATAATAGTACTATGCATTTGGGAAATACAGTCAATATTTGTTGCATTGGTCCTAACTCTTCTGAATTCGAGTATGGTTACGATATATTGGCTTGGTCTGAGACATGCAAACTGACATTTGATTCTTTTGCAAAGAACGTTCAACGTGTTACTTTACCATTTTCATCAAATTTCCTTGTCATTCCATCTGGTTCTTTTGAACCTCTCGAGCTAGAAATTTGCATAACCCCATTGATGCAAATCTATATAAAGACCCTGACTGGAAAAGTGACCACCCTAAAGGTTAAGAGTTCAGACACGATAGTCGATGTGAAGAAGAAGTTTTGTGACAAAGGAGGCAACGAAGTGCACGATCAACGTCTGATCTTTGCCGGTAAGCAACTAGAAGACATGCAGACTGTTGCCGATTACAACATCCAAAACAAGTCAATCATCACCCTTGTGCTCCGCCTTTCCGGGAGCTAG 957 0.3992 MSRKKNTVLISDPQVFDCYNCYQTLTIPVFQCDNGHIVCSTCYPKLKNKCGKCSLRINSKRCKAIENILQSTEMPCPNEIHGCKERISYLGNGKHEECIHEPCCCPLLGCDYVASSKVLSNHFSHKHDDCQIYFDYGRSFIVSLKSKDETIVLQEESDGKLFILNNSTMHLGNTVNICCIGPNSSEFEYGYDILAWSETCKLTFDSFAKNVQRVTLPFSSNFLVIPSGSFEPLELEICITPLMQIYIKTLTGKVTTLKVKSSDTIVDVKKKFCDKGGNEVHDQRLIFAGKQLEDMQTVADYNIQNKSIITLVLRLSGS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04141 318 SUPERFAMILY Ubiquitin-like 231 317 IPR029071 -
Trre9g04141 318 ProSiteProfiles Zinc finger SIAH-type profile. 71 128 IPR013010 GO:0008270
Trre9g04141 318 Pfam Seven in absentia protein family 61 212 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre9g04141 318 ProSiteProfiles Ubiquitin domain profile. 243 318 IPR000626 GO:0005515
Trre9g04141 318 Gene3D - 240 318 - -
Trre9g04141 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 123 IPR013083 -
Trre9g04141 318 SUPERFAMILY TRAF domain-like 75 227 - -
Trre9g04141 318 FunFam Polyubiquitin 5 243 318 - -
Trre9g04141 318 Pfam Ubiquitin family 245 315 IPR000626 GO:0005515
Trre9g04141 318 SMART ubq_7 243 314 IPR000626 GO:0005515
Trre9g04141 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 3 240 IPR044286 -
Trre9g04141 318 PRINTS Ubiquitin signature 274 294 IPR019956 -
Trre9g04141 318 PRINTS Ubiquitin signature 295 316 IPR019956 -
Trre9g04141 318 PRINTS Ubiquitin signature 253 273 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04141 Trre-Chr9 49255615 49258042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04141 243 318 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 64.474 3.11e-24 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04141 K04506 - mtr:11432566 374.015