Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04136 ATGGTTCTATCGGAAACGGCAACCCATATGGACGCTTCTGTCCATTCAACATTCGCCTCTCGCTATGTCCGCACATCCCTTCCCAGGTTCAAGATGGGGGATCATTCGATCCCGAAGGAAGCCGCGTATCAGATCATAAACGACGAGCTGATGCTGGATGGTAACCCTAGGCTGAATCTTGCGTCATTTGTGACCACATGGATGGAGCCCGAATGCGACAAACTCATCATGGCTTCAATTAACAAAAACTATGTCGACATGGATGAGTATCCTGTCACCACAGAGCTCCAGAACCGGTGTGTTAACATGATAGCTCATCTCTTCAATGCACCACTTGAAGAGTCAGAACCTGCTGTTGGTGTTGGCACTGTTGGCTCATCAGAGGCCATAATGTTAGCTGGATTAGCATTCAAGAGAAAGTGGCAAAACAGAATGAGAAGTGCAGGGAAGTCTTGTGAGAATCCCAACATTGTCACTGGTGCCAATGTTCAGGTTTGCTGGGAGAAATTCGCAAGGTACTTTGAGGTGGAACTGAAAGAGGTGAAGCTGAGTGATGGATACTATGTATTGGACCCTGAAAAAGCTGTTGAAATGGTCGATGAGAACACCATTTGTGTTGCTGCTATTCTTGGCTCCACATTAAACGGAGAGTTTGAAGATGTCAAGCGCTTAAACGATCTCCTAGTAGCAAAAAATGCTGAAACTGGTTGGGAAACTCCAATTCATGTGGATGCAGCAAGTGGTGGATTCATTGCACCATTTCTTTATCCAGAGCTAGAATGGGACTTTCGTTTACCACTTGTGAAGAGTATTAATGTTAGTGGACACAAATATGGTTTAGTCTATGCTGGTATTGGTTGGGTCATTTGGAGAAGCAAAGAAGATCTTCCTGATGAACTCATCTTTCACATTAACTACCTTGGAGCTGACCAACCTACCTTCACTCTCAACTTCTCCAAAGGTTCTAGCCAAGTTATTGCTCAGTACTACCAACTAATTCGTTTGGGTTATGAGGGATATAGAAATGTGATGGAAAACTGCAGAGACAACATGATGGTACTTAAGGAGGGACTCGAGAAAACGGGTCGGTTTGACATTGTATCCAAAGACGATGGTGTACCACTGGTGGCCTTCACTTTGAAGGACCACAGCAACTTTAATGAATTCCAAATCTCTGATATGCTGAGACGCTATGGTTGGATAGTGCCAGCATACACCATGCCACCAGATGCACAACATGTAACAGTGCTCCGTGTTGTGATCAGGGAGGACTTTTCGCGTACCTTTGCAGAGCGCCTCGTTATTGACATCACCAAGGTGGTCCATGAGCTGGACTTGGTTCCTGCAAGGGTAGTCAGTACCAACACCATAGCAGTTTCTGGAGATGAAGACGCAGAAGATGGTGACAAAGTAATAATTTCTAAGAGTGTTCTGGAGACTCAAAGGAAAATCACCACAGCTTGGAGGAAATTTGTGATGGACAGAAAGAAGACCAACGGTGTTTGTTAA 1509 0.4486 MVLSETATHMDASVHSTFASRYVRTSLPRFKMGDHSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEESEPAVGVGTVGSSEAIMLAGLAFKRKWQNRMRSAGKSCENPNIVTGANVQVCWEKFARYFEVELKEVKLSDGYYVLDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVAKNAETGWETPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYRNVMENCRDNMMVLKEGLEKTGRFDIVSKDDGVPLVAFTLKDHSNFNEFQISDMLRRYGWIVPAYTMPPDAQHVTVLRVVIREDFSRTFAERLVIDITKVVHELDLVPARVVSTNTIAVSGDEDAEDGDKVIISKSVLETQRKITTAWRKFVMDRKKTNGVC 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04136 502 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Trre9g04136 502 Gene3D - 361 448 - -
Trre9g04136 502 SUPERFAMILY PLP-dependent transferases 14 444 IPR015424 -
Trre9g04136 502 Pfam Pyridoxal-dependent decarboxylase conserved domain 38 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trre9g04136 502 PANTHER GLUTAMATE DECARBOXYLASE 1 502 IPR010107 GO:0004351|GO:0006536|GO:0030170
Trre9g04136 502 Gene3D - 1 65 - -
Trre9g04136 502 FunFam Glutamate decarboxylase 1 65 - -
Trre9g04136 502 FunFam Glutamate decarboxylase 66 360 - -
Trre9g04136 502 FunFam Glutamate decarboxylase 361 448 - -
Trre9g04136 502 Gene3D - 66 360 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04136 Trre-Chr9 49219830 49225375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04136 1 502 Calmodulin-binding Proteins AT5G17330 82.869 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04136 K01580 - gmx:100787167 905.59