Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04120 ATGCAAACACTCAAAACAAATCTCAACCCACCAATTTCACTTGGTTGGTCCGACCCGGATCCATGTAAATGGAAACATGTTATTTGCTCAGACGACAAACGGGTTACCCGAATCCAAATCGGTCGTCAGAATCTTCAAGGTACACTACCTCAAACCCTTCGAAACCTAACTCAGTTACAACATTTGGAGCTTCAATTCAACAATTTCTCTGGTCCTCTTCCGAGTTTAAACAATTTAAACTCTCTTCAAGTTTTCATTGCTAGCAGTAACAGTTTTTCAGCAATTCCGGACGATTTTTTCGCCAATATGACTCAGCTTGAAACTGTTGAGATCGATGATAACCCTTTTGAGCCTTGGGAGATTCCTATGTCTTTAAAAGATGCTTTGTCACTACGGAATTTTTCTGCGAATCATGCTAATGTTAAGGGTAAGTTACCGGATTTTTTTAGTGTTGATGTGTTTCCTAGCTTGACCCTTTTGCATTTAGCTTTCAATAATCTTGAGGGTGTGTTGCCAAAGAGCTTTTCTCTGTTAAATGTTCAGTCTTTGTGGTTGAATGGTCAGAAGAGTGATGCTAAGCTTAGTGGGTCAGTTGATGTTTTGCAGAATATGACTTCTTTGAGTGAAGTTTGGTTGCATGATAATAGGTTTAGTGGTCCTTTGCCTAGTTTTGAAGGGTTTGAAAGTTTAAAGGTTTTGAGTTTAAGGGATAACTCTTTCACCGGTGTTGTTCCTAGTTCATTGGCTAGCCTTACATCACTTAAAGTCATCAACTTGACTAATAATTTGTTTCAGGGTCCAATGCCGGTTTTTGGTGCTGGTGTTGAGGTTGATAATATTAAGGATTCTAATAGGTTTTGTTTGTCTAGTCCTGGTGATTGTGATCCTAGGGTGCAGGTTCTTCTTTCTGTTGTTGGGGCTATGGGTTATCCTTCAAGGTTTGCTGATGATTGGAAGGGGAATGATCCTTGTGCTGATTGGATTGGGATTACTTGTAGTGATGGCAACATTAGTTTTGTTAATTTTCAAAAGATGGGTCTTAGTGGTGTGATATCTCCCGAGTTTGCTAAGCTTAAATCGCTGCAAAGACTTATTCTTTCTGATAACAATCTTACCGGTTCGATTCCGAATGAACTTACTACTTTGCCTGTGCTAACTCAATTGAATGTTGCTAACAATCATATCTTTGGAAAAGTACCGAGTTTTAGGAGCAATGTGATTGTGATTACTAGTGGGAACATTGATATAGGGAAGGATAAAAGCAGCCTTGCCCCTCAGGGTTCAGTGTCTTCTAATGGTACCGATGCGAGTGGTGGAAATGGTGGGAGTAATGGAAATGATGCCAAAAAGTCTTCTTCTCATGTAGGATTGATCGTGTTTGCTGTGGTTGGGGCTGTTTTTGTTGCATCTTTGATTGGTTTCTTGGTTTTCTGCTTGCTTAGAATGAAGCAAAAGAAGTTAAGTAGGGTCCAAAGTCCGAATGCACTAGTTATTCACCCTCGACATTCTGGATCAGATAATGAAAGTGTGAAGATAACAGTTGCAGGTTCCAGTGTCAGTGTTGGAGGTGTGAGTGAAGCCCACGCTGTTCCCAATAGTGAAATGGGAGATATTCAAATGGTTGAAGCGGGGAACATGGTTGCGGATTTTGGTCTTGTGCGTCTCGCTCCAGAAGGGAAAGCCTCAATTGAAACAAGAATTGCAGGAACTTTCGGATATTTGGCTCCAGAATATGCAGTTACCGGCCGTGTGACAACTAAAGTTGACGTGTTCAGCTTTGGTGTAATATTGATGGAGCTGATTACCGGAAGAAAAGCACTTGACGATAGCCAACCTGAGGATAGCATGCACCTTGTAGCTTGGTTCCGCAGAATGTACATAGATAAGGACTCGTTCCGCAAAGCGATTGATCCGACAATCGATATCAATGAAGAAATACTTGCTAGTGTTCACACTGTTGCAGAGTTAGCTAGTCACTGCAGTGCAAGGGAGCCATATCAAAGGCCTGACATGGGTCATGCGGTTAACGTGCTTTCTTCTCTTGTAGAACAATGGAAACCGTCTGATACAAACTCCGAAGATATCTATGGAATTGACCTTGACTTATCTTTACCACAAGCTCTCAAGAAGTGGCAAGCTTATGAAGGTGCAAGTCAATTGGAGTCATCATCTTCTTCGCTTCTTCCGAGTTTGGATAACACACAAACAAGTATACCTAATCGCCCGTATGGATTTGCTGATTCTTTCACATCGGCAGATGGTAGGTGA 2268 0.414 MQTLKTNLNPPISLGWSDPDPCKWKHVICSDDKRVTRIQIGRQNLQGTLPQTLRNLTQLQHLELQFNNFSGPLPSLNNLNSLQVFIASSNSFSAIPDDFFANMTQLETVEIDDNPFEPWEIPMSLKDALSLRNFSANHANVKGKLPDFFSVDVFPSLTLLHLAFNNLEGVLPKSFSLLNVQSLWLNGQKSDAKLSGSVDVLQNMTSLSEVWLHDNRFSGPLPSFEGFESLKVLSLRDNSFTGVVPSSLASLTSLKVINLTNNLFQGPMPVFGAGVEVDNIKDSNRFCLSSPGDCDPRVQVLLSVVGAMGYPSRFADDWKGNDPCADWIGITCSDGNISFVNFQKMGLSGVISPEFAKLKSLQRLILSDNNLTGSIPNELTTLPVLTQLNVANNHIFGKVPSFRSNVIVITSGNIDIGKDKSSLAPQGSVSSNGTDASGGNGGSNGNDAKKSSSHVGLIVFAVVGAVFVASLIGFLVFCLLRMKQKKLSRVQSPNALVIHPRHSGSDNESVKITVAGSSVSVGGVSEAHAVPNSEMGDIQMVEAGNMVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDDSQPEDSMHLVAWFRRMYIDKDSFRKAIDPTIDINEEILASVHTVAELASHCSAREPYQRPDMGHAVNVLSSLVEQWKPSDTNSEDIYGIDLDLSLPQALKKWQAYEGASQLESSSSSLLPSLDNTQTSIPNRPYGFADSFTSADGR 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04120 755 Pfam Protein kinase domain 546 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04120 755 MobiDBLite consensus disorder prediction 420 447 - -
Trre9g04120 755 SMART LRR_typ_2 227 250 IPR003591 -
Trre9g04120 755 SMART LRR_typ_2 154 177 IPR003591 -
Trre9g04120 755 SMART LRR_typ_2 79 102 IPR003591 -
Trre9g04120 755 SMART LRR_typ_2 358 382 IPR003591 -
Trre9g04120 755 SMART LRR_typ_2 251 274 IPR003591 -
Trre9g04120 755 Gene3D Ribonuclease Inhibitor 1 294 IPR032675 -
Trre9g04120 755 FunFam Leucine-rich repeat receptor-like kinase 296 419 - -
Trre9g04120 755 MobiDBLite consensus disorder prediction 721 744 - -
Trre9g04120 755 SMART serkin_6 449 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04120 755 PANTHER OSJNBA0070M12.3 PROTEIN 1 547 - -
Trre9g04120 755 Gene3D Ribonuclease Inhibitor 296 420 IPR032675 -
Trre9g04120 755 ProSiteProfiles Protein kinase domain profile. 299 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04120 755 SUPERFAMILY L domain-like 18 402 - -
Trre9g04120 755 Pfam Leucine rich repeat 223 263 IPR001611 GO:0005515
Trre9g04120 755 Pfam Leucine rich repeat 354 395 IPR001611 GO:0005515
Trre9g04120 755 Gene3D Transferase(Phosphotransferase) domain 1 528 701 - -
Trre9g04120 755 FunFam Receptor-like kinase TMK4 1 292 - -
Trre9g04120 755 Pfam Leucine rich repeat N-terminal domain 298 333 IPR013210 -
Trre9g04120 755 Pfam Leucine rich repeat N-terminal domain 2 30 IPR013210 -
Trre9g04120 755 SUPERFAMILY Protein kinase-like (PK-like) 547 687 IPR011009 -
Trre9g04120 755 MobiDBLite consensus disorder prediction 721 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04120 Trre-Chr9 49088098 49091030 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04120 38 681 Receptor kinase-like Gene Family AT1G28440 27.195 9.96e-33 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trre9g04120 Pkinase 2.5e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04120 K00924 - gmx:100305404 780.015