Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04118 ATGGTTTTGTCATGGACAAAAGGAAGTAGAGTTTTTCGTCGTGCAAGAAAAGGAAAAGAGTTATTATCAAATTCATGCAATGATTTACAAGTTGAGATAGCAATCCCAACTCATTTTCGTTGCCCGGTAACACTAGATTTAATGAAAGATCCGGTTACACTTTCCACAGGTATAACCTACGATAGAGACAGCATCGAAAAATGGATCGAATCGGGTAACAAAACGTGTCCCGTTACAAAAACGGAACTAACATCCTTTGACATTGTACCAAATCATTCTCTTCGTAGAATGATTCAAGATTGGTGTGTACAACACCGTTCCTACGGCGTGGAAAGAATCCCAACTCCACGTATTCCAGTAACCCCATACGAGGTTACCGACACGTGTAACAGGATTCTTTCAGAGACGCAACAAGGGGATGAAAACAAGGTTATTGAATTGGTGAAGAAGATAAAGAGATGGGGAAAAGAGAGTGAGAGGAACAAGAAATGTATTGTTTCAAATGGTGCTCCTCTTGTTCTTGCTAAGGTTTTTGATTCTTTCTCACGTGGTTCAATAGAGAAGAATTTTGTTGTTTTGGAAGAGATTTTGGAAGTGCTGACGTGGATGCGTCCTGTTCCTGAAGAGGGTAGATTTGTCTTTTTAGGATCTTCAAATTCTTTGAGTTGTTTGGTTTGGTTCTTAAATGATCAACAAAAAATTTCAACTAGGCAAAATGCTTCTTTGTTGCTTAAAGAAATGAATGTTGAATCATTGGTAAAAATTGATGGAATTGTTGAATCTTTGGTCAACATGGTTAAGGTTAATGTTGAGATTGGAATTGTTTCAACAAAAGCATGTTTGTCAACAATTTTTAACTTGGTTTACTCATCAAAGAGTAGAAAATTGGTTTTAGAGAGATTTGTTGAATTGGGTTTGGTTTCAATTTTATTGGAGAATATTCTTGTTGATGCTGAAAAAGGGGTATGTGAGAAAGCTTTAGGTGTATTGAATTGTCTTTGTGATAGCAAAAATGGGGTGCAAATAGCAAAGTCAAATGCTTTGACTTTACCTCTTGTTATTAAGAAGCTTTTGAGAGTTTCTGAATTGAGTTCTGGTTTTGTTGTTTCAATTGTTTACAAGATTTGTGATAAGGCTGAGGAAGGTGTTTTGATTGAGGCAATTCAAGTTGGGATGTTTCAAAAACTACTTGTTTTGTTGCAAGTTGGTTGTGGTGAGAGCACAAAGGAGAAAGCTACTGAATTGTTGAAATTGTTGAATGGTTATAAAAGCAAAGCAGAATGTGTTGATTCATCATCATTGGATTTCATGCACCTTAAGAAGCCATTCTAA 1332 0.3619 MVLSWTKGSRVFRRARKGKELLSNSCNDLQVEIAIPTHFRCPVTLDLMKDPVTLSTGITYDRDSIEKWIESGNKTCPVTKTELTSFDIVPNHSLRRMIQDWCVQHRSYGVERIPTPRIPVTPYEVTDTCNRILSETQQGDENKVIELVKKIKRWGKESERNKKCIVSNGAPLVLAKVFDSFSRGSIEKNFVVLEEILEVLTWMRPVPEEGRFVFLGSSNSLSCLVWFLNDQQKISTRQNASLLLKEMNVESLVKIDGIVESLVNMVKVNVEIGIVSTKACLSTIFNLVYSSKSRKLVLERFVELGLVSILLENILVDAEKGVCEKALGVLNCLCDSKNGVQIAKSNALTLPLVIKKLLRVSELSSGFVVSIVYKICDKAEEGVLIEAIQVGMFQKLLVLLQVGCGESTKEKATELLKLLNGYKSKAECVDSSSLDFMHLKKPF 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04118 443 Gene3D - 126 429 IPR011989 -
Trre9g04118 443 SUPERFAMILY RING/U-box 32 111 - -
Trre9g04118 443 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
Trre9g04118 443 CDD RING-Ubox_PUB 36 87 IPR045210 -
Trre9g04118 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 112 IPR013083 -
Trre9g04118 443 PANTHER WDSAM1 PROTEIN 32 429 IPR045185 GO:0061630
Trre9g04118 443 FunFam RING-type E3 ubiquitin transferase 29 111 - -
Trre9g04118 443 SUPERFAMILY ARM repeat 187 422 IPR016024 -
Trre9g04118 443 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
Trre9g04118 443 Pfam U-box domain 35 106 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04118 Trre-Chr9 49073336 49074667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04118 10 443 U-box Gene Family AT5G37490 43.991 1.30e-113 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04118 - - gmx:100795913 627.091