Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04114 ATGAGCTCTTCTTCCTCCAGAAAAATGAATGAGGATGCGCAACAGGCCCAAGGGGAAGTTCACCTGCCAAGGTGGCTTGAGGATTTTTTGGCGCAAAAGTTCTCTGACTCTTGTCCTGCTCATTCGAAAGAGAGGAATATATACTGCATAAATTGCAAATTATCTGCTTGTAAACATTGTATGTCATCAGGATCTCATGAAGATCACCGGATACTGAGAATCTATAAGAATAATTACAGGGATGGCGTCTGCCTGGCTGCTATGAAGACATATATCGATTGCTCCCAGATCCAGTCGTTCAAATGCAACAACCTAAGGGTTCTGAATCGTAGTCCGCGTTGTGGATCAACATTGGATTATGCAAAATCATGCAACAATGGCAGCAGAAAATCGAAAGAAGCTAAAGCATATCAGTACTGCTCCATAACTTGCATGGTGAAAGCTGCAAGAAAGTCTTCAATTCCTCCCATTGCTTCCATCCAGGCTCCTCCTTGTCAAGAATCACCGGGGGAAATTTGTGTGCCCTCTAAGCGAAAGAGGAAACGTAAAGGAATTCCGCATAGAGCTCCGTTGTTCTAA 579 0.437 MSSSSSRKMNEDAQQAQGEVHLPRWLEDFLAQKFSDSCPAHSKERNIYCINCKLSACKHCMSSGSHEDHRILRIYKNNYRDGVCLAAMKTYIDCSQIQSFKCNNLRVLNRSPRCGSTLDYAKSCNNGSRKSKEAKAYQYCSITCMVKAARKSSIPPIASIQAPPCQESPGEICVPSKRKRKRKGIPHRAPLF 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04114 192 Pfam PLATZ transcription factor 76 146 IPR006734 -
Trre9g04114 192 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 16 191 - -
Trre9g04114 192 Pfam B-box zinc finger 36 72 IPR000315 GO:0008270
Trre9g04114 192 Gene3D Classic Zinc Finger 37 76 - -
Trre9g04114 192 ProSiteProfiles Zinc finger B-box type profile. 33 74 IPR000315 GO:0008270
Trre9g04114 192 SUPERFAMILY B-box zinc-binding domain 37 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04114 Trre-Chr9 49053206 49055166 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Trre9g04114 PLATZ 6.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04114 - - tpra:123919466 331.257