Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04113 ATGTCTTTCTCGACGATCGATGTTTGCAAGAAGCGAAAACGACGGCAGAAGATTTTTAGGTTACAATCTTTCGCTGATTCTGGTTGTCCAATTGCACCTTCAGGTTCTTTCCGTGAAAATGTTCGATTGTTTCTTCAAGAAGCTGCTGAACTTGAAGATTATACGGTTATGGGAAATCCTCTTTGGTGCACTTTTCTGAATCATGATAAGACAAATCTTATGGCTCCTTTCTATACTCTTGAAGAAGATGTTTATAACTCTTCACATCCTTTCTGTGATCATTGCCGTTGTGTAGGTTGGAGTGGACATTTTGTATCAAAGAGAAGGTACCATTTCATAATTCCAATGGATAATGAATGGCATAAACCCTTAAATGAAGAAGCTCTTGATAATCAAAGTCATCTGTTACATGGTGTGATTCATTGCAATGGTTATGGCCATTTGGTATGTCTTAATGGCATTGAAGGTGGTTCTAAATTTCTCAGTGGTAGAGAAATCATGGAACTATGGGACAGAATTTGCACCAATCTTAGAGCAAGGCAAATTGCAGTGGAAGATGCTTCAAGGAAAAGATCAATGGATCTTAGATTACTTCACGGAGTTGCTTATGGTCACTCTTGGTTTGGTAGGTGGGGCTATAAGTTCTGTCGTGGAAGCTTTGGTGTGACAGAAGAAAACTACTATGAAGCAATGGAAATTCTTGGTTCATTAGTGCTTGATGATATTGTAAGAGATTTGAGTAAGACAAAGTATCATAAAGATATCAAACAAATGATTCGTTTCTATAGAGATATGAGTGAAACTCGAATAGTCACAATAAGGGAACTTCTTAGATTCATGCTCACTGTCAAGTCTCGTCGTATCTCAAAGATAACAGTCTCTTATTCTTCTTCTAATGCTGCTTCTGCTGCTGGTTCACCTCCTTGTTCTACTTCAGCATGTTTGTCAAGAAATTCAACCAAACATGCACTTTCAAGTAGATCAAATTCCATGATTAAGGAAAAATCAGGAAAGTATAAGAAGTTCAGCACTGCAGTGGCGAATATGGATAGTAGATGGCCAACAAGGAGACTCGAATTCGCAGCTCAAGTGATTGTTGATGCATTAAAAGAAGACAAAGCTATGAAACCAGGCTCAAGTGGAATGACAAGGCAAGATGTGAGGGATGCAGCTAGGCTTCATATAGGTGACACAGGTTTACTTGATTATGTGCTGAAATCACTCAACAATGTCATTGTTGAAAACTATGTCGTTTGCCGCATGGTTAACTCTTCATCAAGGATCCTTGAGTATACCATTCATGAGCTTGGAAATGAGTTCAAAGCACCTGAAGTAGAACATAGTGTAATGACAGTTGTAGATAATCCTCAAGTCGAGTCAAAAACACCATTATCATCATCTTCATCTTTGGTGCCTGGTAATGATGTTTACAGTGATGTATTTTATCTCTACAAGAATGTGTTACTAGGTTATCCAGATTCGGAACCAGTTGAATTAGCAGTTCAGACAATTCTTGACTGCAGACACTTTGTGAAAGAGTGGAAATTGAGAGATGAAATGGAGCATGTTTTGACATTTATTTGCCGTTTGAAACCGAATTTCATCGAGAATAAGTTGGATTTAAAAGGGCCATCTTGTGGTGAGATTGTAACTGTTCCACTGCATGCAACAGTTAAAGATTTAAAGCAAGCTGCTGAGGCTGCATTAAGGGACACATATTGCATAGCTGAAAGACTAATTGTAACTGATATCAAAGAATTGATGGATTTGGATGATGAAGAAGTTATATTTGGACAGATTGAATCAGGTGTGAAGCTTTGTGTTAGGGGAATTGGAATAGATTTATACACACCATTGAAGTACCAAGGAGGTTCTGATAATTGGAAGGTGAGGTGTGAGTGTGGAGCACATGACGATGACGGTGAGAGAATGATAGCTTGTGATATTTGTGAGGTATGGCAGCATACAAGATGTTGTGGAATAGATGATTCTGAGACAGTTCCACCATTATTTGTTTGTTCTGGATGTTGTGATTCACTTGTGCCACCAAGGATTGAATCTAGCAGATATGGTATGGTGGATTGTGCTGATGCTTTTCTGGTTTCACCTGAGGCTGCTCATTTGATTGAGTATGGTTATGGCTATTGA 2148 0.3859 MSFSTIDVCKKRKRRQKIFRLQSFADSGCPIAPSGSFRENVRLFLQEAAELEDYTVMGNPLWCTFLNHDKTNLMAPFYTLEEDVYNSSHPFCDHCRCVGWSGHFVSKRRYHFIIPMDNEWHKPLNEEALDNQSHLLHGVIHCNGYGHLVCLNGIEGGSKFLSGREIMELWDRICTNLRARQIAVEDASRKRSMDLRLLHGVAYGHSWFGRWGYKFCRGSFGVTEENYYEAMEILGSLVLDDIVRDLSKTKYHKDIKQMIRFYRDMSETRIVTIRELLRFMLTVKSRRISKITVSYSSSNAASAAGSPPCSTSACLSRNSTKHALSSRSNSMIKEKSGKYKKFSTAVANMDSRWPTRRLEFAAQVIVDALKEDKAMKPGSSGMTRQDVRDAARLHIGDTGLLDYVLKSLNNVIVENYVVCRMVNSSSRILEYTIHELGNEFKAPEVEHSVMTVVDNPQVESKTPLSSSSSLVPGNDVYSDVFYLYKNVLLGYPDSEPVELAVQTILDCRHFVKEWKLRDEMEHVLTFICRLKPNFIENKLDLKGPSCGEIVTVPLHATVKDLKQAAEAALRDTYCIAERLIVTDIKELMDLDDEEVIFGQIESGVKLCVRGIGIDLYTPLKYQGGSDNWKVRCECGAHDDDGERMIACDICEVWQHTRCCGIDDSETVPPLFVCSGCCDSLVPPRIESSRYGMVDCADAFLVSPEAAHLIEYGYGY 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04113 715 SUPERFAMILY FYVE/PHD zinc finger 624 683 IPR011011 -
Trre9g04113 715 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 686 - -
Trre9g04113 715 SMART PHD_3 631 677 IPR001965 -
Trre9g04113 715 CDD PHD_MMD1_like 632 676 - -
Trre9g04113 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 680 IPR013083 -
Trre9g04113 715 ProSitePatterns Zinc finger PHD-type signature. 632 676 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04113 Trre-Chr9 49049718 49052180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04113 8 682 PHD Transcription Factor Family AT5G22260 32.365 5.31e-116 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04113 K26271 - gmx:100797388 1041.95