Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04110 ATGTTGTTAAACTTGCATATTGTTTCGTCTGTTATTGAGAAAGAAAGAAGAGGAGATTATCTCGGTAAAACTGTTCAGGTTGTTCCACACGTTACAGATGCTATCGAAGAGTGGATAGAACGTGTAGCACAGGTACCTGTTGATGGAAAAGAAGGCCCTGCTGATGTTTGTGTCATTGAATTGGGTGGAACTATAGGGGATATTGAATCTATGCCTTTTATTGAAGCGCTTGGCCAGTTTTCGTACCGTGTAGGCCCTAACAACTTCTGTTTGGTTCATGTCAGCCTGGTGCCTGTTCTCAATGTTGTCGGTGAACAGGAAGCTAAAGCTCATAAAGTAACTTCAAAATTCAACTCATGCAACCCTTTTTTCACAATTCTCATAAAGCCTTATCATCTGGTACAAAGTCAACTGTGTGTACCAAGTTTAAAATGTGTTTTTGAGAACAAAGACAAGTATGTGATGCTGCATATTGGAAAAAGATCATGGAATCTGAAACTGCTTCATTGTAATGACGATAAAAATGGACGTCGTCTTCCGGCAGGTTGGCCGTTGTTTGCAAGTGAAAGTGGACTGCAACCGGGATATGTTTGTGTCTTTGAACTGATAAACAAGAATGATTTAGTTTTTAAAGTTCATGTTTTCTAA 648 0.392 MLLNLHIVSSVIEKERRGDYLGKTVQVVPHVTDAIEEWIERVAQVPVDGKEGPADVCVIELGGTIGDIESMPFIEALGQFSYRVGPNNFCLVHVSLVPVLNVVGEQEAKAHKVTSKFNSCNPFFTILIKPYHLVQSQLCVPSLKCVFENKDKYVMLHIGKRSWNLKLLHCNDDKNGRRLPAGWPLFASESGLQPGYVCVFELINKNDLVFKVHVF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04110 215 CDD B3_DNA 123 215 IPR003340 GO:0003677
Trre9g04110 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 113 IPR027417 -
Trre9g04110 215 Pfam B3 DNA binding domain 123 215 IPR003340 GO:0003677
Trre9g04110 215 Pfam CTP synthase N-terminus 7 113 IPR017456 GO:0003883|GO:0006221
Trre9g04110 215 SMART B3_2 123 213 IPR003340 GO:0003677
Trre9g04110 215 ProSiteProfiles B3 DNA-binding domain profile. 123 215 IPR003340 GO:0003677
Trre9g04110 215 SUPERFAMILY DNA-binding pseudobarrel domain 117 215 IPR015300 -
Trre9g04110 215 Gene3D - 119 215 IPR015300 -
Trre9g04110 215 PANTHER CTP SYNTHASE 7 111 IPR004468 GO:0003883|GO:0006221
Trre9g04110 215 Gene3D - 5 118 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04110 Trre-Chr9 49041653 49044084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04110 102 215 REM Transcription Factor Family AT1G49480 29.167 1.05e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre9g04110 CTP_synth_N 4.2e-38 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04110 K01937 - gmx:100799980 189.889