Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre9g04109 | ATGATCGGGAAGAAGGAGATGAAGGAAAAGGATAATAACAATCAAACGACGCCGTGTTCGAGATCTTCTTCTACACTTTCATCTTCTGAAGATGAAGGAGAGTACGAAGTTCAGGATCTTCGAGATCGATTGAAATCATCAAGAGGAAGCATGTTCAATTTGATAGAGAAGGAGTTAGGGCTAAAGATCGGTTGGAGAAAGTTCAGTCGCGGAGCTCTTTTTCACGAATCCGTTATTATTAATCCTGATAACAGGTGGTATCGAGCATGGATCAAATTCATATTATTATGGGCAGTATACTCATCTTTCTTCACCCCAATGGAGTTTGGATTTTTTCGTGGTCTGCCCGAGAATCTATTCATACTGGACATCATAGGACAAATAGCTTTTCTTGTGGACATTGTTTTGCAGTTCTTTGTTGCATATAGAGATAGTCAGACCTATCGCATGGTCTACAAGCGTACTCCTATTGCTCTCCGGTATCTAAAATCAACCTTTGTCGTTGATCTTCTTGGATGTATGCCCTGGGACCTCATCTACAAGGCTTGTGGACGGAGAGAGGAAGTGCGGTACCTATTGTGGATCAGATTATATAGGGCGCAGAGAGTCGTACAATTTTTCAGAAATTTGGAGAAAGACATACGTGTGAATTACATTATTGCTCGGATTGTGAAACTTTTAGTTGTTGAACTCTACTGCACCCACACAGCAGCCTGCATTTTCTACTATTTGGCTACTACACTTCCTGAATCCCAAGAGGGTTACACATGGATTGGAAGTTTGAAACTGGGTGACTATAGTTATTCAAGGTTCAGAGAAATTGATCTATGGAAGCGCTACACAACATCGTTGTATTTTGCTATTGTTACAATGGCTACTGTTGGCTATGGAGATATACATGCAGTAAATTTGAGGGAGATGATATTCATAATGATTTATGTTTCATTTGATATGGTTCTTGGTGCTTACTTGATCGGTAACATGACAGCCTTGATAGTCAAGGGATCAAAGACTGAAAAGTTTAGAGACAGGATGACAGATCTGATGAAATATATGAATAGAAATAAACTTGGTAGGGATATCCGTGAACAAATAAAGGGCCACGTGCGCCTGCAATTTGAGAGCAGTTACACTGATGCTTCTGTCCTTCAGGACATTCCCATTTCTATTCGATCTAAGATATCTCAATCGTTGTATTTGCCATACATAGAGAACGTTTCTCTTTTTAAAGGATGCTCTTCAGAATTCATCAATCAGATTGTTACTAGGCTCCATGAGGAATTCTTTCTTCCGGGGGACGTTATAATGCAACAAGGATACGCTGTAGATCAACTATATTTTGTCTGTGATGGTCAGCTGGAGGAAGTAGGCATAGCTGAAGATGGGTCTGAAGAAACTATTTCACTTTTAGAGCACAACAGTTCATTTGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCATATACTGTCCGCGTTTGTGAACTGTGTAGAGTCCTGCGGCTCGATAAACAATCATTTTCAAATATCCTAGAAATATACTTTTATGATGGGAAGAAAGTATTAGACAACCTTATAGAGGGAAAACAGTCTATTAGAGGTAAGCAATTGGAGTCAGACATCACATTTCATATTGGAAAGCTAGAATCTGAACTTTCTTTGAAGGTCAACAGAGCAGCTTATGATGGTGATATGTATCAGCTAAAGAGTTTGATTCGAGCTGGAGCTGATCCCAAGAAGACAGATTATGACGGGAGATCACCTTTGCATCTTGGAGCATGCAGAGGATATGAAGATATCACGCTTTTCCTTATTCAAGAAGGTGTAGACATCAACATCAAAGATAACTTTGGGAACACACCGCTACTTGAAGCAGTTAAGAGTGGACACGATCGGATTGCTGCTTTACTTGTTAGTAAAGGGGCCTCTATGGAGATAGATGATGGTGGTAGTTTTTTATGCACTGCAGTTGCAAGAGGAGATTCGGATTATCTTAAAAGGCTTTTATCTAATGGAATGGATCCTAACTTGAAAGATTATGACTATCGAACCCCTCTACATGTTGCTGCATCTGAAGGTTTAATCTTCATGGCAAAGTTGTTATTAGAAGCCGGAGCTAGTGTTTTTATCAAAGACAGATGGGGAAATACACCGCTTGATGAAGCTCGGATGAGTGGAAATAAGAATCTGATAAAGCTGCTAGAAGATGCAAAATCTGCTCAATTGACAGAATTTCCTTTTCCTCAAGAAATTACAGATAAAGTACATCCGAAGAAGTGCACAGTGTTCCCTTTCCACCCATGGGATCCAAAAGAGCAAAGGAGAAATGGAATAGTATTATGGGTTCCACACACCATTGAAGAACTAATCAAAACAGCTGCAGAACAGATAGGATTTTCTAGTGACTGTTGTATTTTATCAGAAGATGCCGGTAAAATTATTGATGTCGGCATGATTAAGGATGATCAGAAGCTGTATTTAGTCGATGAAACGCATTAA | 2499 | 0.3954 | MIGKKEMKEKDNNNQTTPCSRSSSTLSSSEDEGEYEVQDLRDRLKSSRGSMFNLIEKELGLKIGWRKFSRGALFHESVIINPDNRWYRAWIKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIIGQIAFLVDIVLQFFVAYRDSQTYRMVYKRTPIALRYLKSTFVVDLLGCMPWDLIYKACGRREEVRYLLWIRLYRAQRVVQFFRNLEKDIRVNYIIARIVKLLVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLGDYSYSRFREIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDRMTDLMKYMNRNKLGRDIREQIKGHVRLQFESSYTDASVLQDIPISIRSKISQSLYLPYIENVSLFKGCSSEFINQIVTRLHEEFFLPGDVIMQQGYAVDQLYFVCDGQLEEVGIAEDGSEETISLLEHNSSFGEISILCNIPQPYTVRVCELCRVLRLDKQSFSNILEIYFYDGKKVLDNLIEGKQSIRGKQLESDITFHIGKLESELSLKVNRAAYDGDMYQLKSLIRAGADPKKTDYDGRSPLHLGACRGYEDITLFLIQEGVDINIKDNFGNTPLLEAVKSGHDRIAALLVSKGASMEIDDGGSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRTPLHVAASEGLIFMAKLLLEAGASVFIKDRWGNTPLDEARMSGNKNLIKLLEDAKSAQLTEFPFPQEITDKVHPKKCTVFPFHPWDPKEQRRNGIVLWVPHTIEELIKTAAEQIGFSSDCCILSEDAGKIIDVGMIKDDQKLYLVDETH | 832 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre9g04109 | 832 | Gene3D | - | 547 | 648 | IPR036770 | - | |
| Trre9g04109 | 832 | SMART | cnmp_10 | 408 | 526 | IPR000595 | - | |
| Trre9g04109 | 832 | ProSiteProfiles | Ankyrin repeat region circular profile. | 617 | 648 | - | - | |
| Trre9g04109 | 832 | SMART | ANK_2a | 648 | 677 | IPR002110 | GO:0005515 | |
| Trre9g04109 | 832 | SMART | ANK_2a | 714 | 744 | IPR002110 | GO:0005515 | |
| Trre9g04109 | 832 | SMART | ANK_2a | 584 | 613 | IPR002110 | GO:0005515 | |
| Trre9g04109 | 832 | SMART | ANK_2a | 681 | 710 | IPR002110 | GO:0005515 | |
| Trre9g04109 | 832 | SMART | ANK_2a | 617 | 646 | IPR002110 | GO:0005515 | |
| Trre9g04109 | 832 | Pfam | Ion transport protein | 88 | 333 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
| Trre9g04109 | 832 | ProSiteProfiles | Ankyrin repeat region circular profile. | 648 | 679 | - | - | |
| Trre9g04109 | 832 | Gene3D | Helix hairpin bin | 335 | 391 | - | - | |
| Trre9g04109 | 832 | ProSiteProfiles | Ankyrin repeat profile. | 617 | 649 | IPR002110 | GO:0005515 | |
| Trre9g04109 | 832 | Gene3D | - | 90 | 334 | - | - | |
| Trre9g04109 | 832 | PRINTS | EAG/ELK/ERG potassium channel family signature | 280 | 297 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Trre9g04109 | 832 | PRINTS | EAG/ELK/ERG potassium channel family signature | 232 | 242 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Trre9g04109 | 832 | PRINTS | EAG/ELK/ERG potassium channel family signature | 123 | 133 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Trre9g04109 | 832 | PRINTS | EAG/ELK/ERG potassium channel family signature | 324 | 333 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Trre9g04109 | 832 | ProSiteProfiles | Ankyrin repeat region circular profile. | 584 | 616 | - | - | |
| Trre9g04109 | 832 | CDD | CAP_ED | 408 | 514 | IPR000595 | - | |
| Trre9g04109 | 832 | Pfam | Ankyrin repeats (3 copies) | 559 | 647 | IPR002110 | GO:0005515 | |
| Trre9g04109 | 832 | Pfam | Ankyrin repeats (3 copies) | 654 | 735 | IPR002110 | GO:0005515 | |
| Trre9g04109 | 832 | Gene3D | Jelly Rolls | 392 | 530 | IPR014710 | - | |
| Trre9g04109 | 832 | ProSiteProfiles | Ankyrin repeat profile. | 681 | 713 | IPR002110 | GO:0005515 | |
| Trre9g04109 | 832 | Gene3D | - | 649 | 744 | IPR036770 | - | |
| Trre9g04109 | 832 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 408 | 511 | IPR000595 | - | |
| Trre9g04109 | 832 | FunFam | Potassium channel SKOR | 88 | 333 | - | - | |
| Trre9g04109 | 832 | ProSiteProfiles | Ankyrin repeat profile. | 648 | 680 | IPR002110 | GO:0005515 | |
| Trre9g04109 | 832 | ProSiteProfiles | Ankyrin repeat profile. | 584 | 616 | IPR002110 | GO:0005515 | |
| Trre9g04109 | 832 | MobiDBLite | consensus disorder prediction | 13 | 31 | - | - | |
| Trre9g04109 | 832 | Pfam | Cyclic nucleotide-binding domain | 428 | 512 | IPR000595 | - | |
| Trre9g04109 | 832 | SUPERFAMILY | Ankyrin repeat | 558 | 736 | IPR036770 | - | |
| Trre9g04109 | 832 | SUPERFAMILY | Voltage-gated potassium channels | 82 | 333 | - | - | |
| Trre9g04109 | 832 | FunFam | Potassium channel KAT2 | 396 | 533 | - | - | |
| Trre9g04109 | 832 | Pfam | KHA, dimerisation domain of potassium ion channel | 758 | 827 | IPR021789 | - | |
| Trre9g04109 | 832 | ProSiteProfiles | Ankyrin repeat region circular profile. | 681 | 713 | - | - | |
| Trre9g04109 | 832 | SUPERFAMILY | cAMP-binding domain-like | 336 | 525 | IPR018490 | - | |
| Trre9g04109 | 832 | ProSiteProfiles | KHA domain profile. | 759 | 832 | IPR021789 | - | |
| Trre9g04109 | 832 | PANTHER | POTASSIUM CHANNEL AKT1 | 59 | 829 | IPR045319 | GO:0005249|GO:0006813 | |
| Trre9g04109 | 832 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre9g04109 | Trre-Chr9 | 49024701 | 49038228 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre9g04109 | 655 | 734 | Ion Channels | AT5G37500 | 34.314 | 1.36e-08 | 56.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre9g04109 | K21867 | - | gmx:100814385 | 1409.05 |