Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04108 ATGAGCTCTTCTTCCTCTAGAAAAATTAATGAGGATGCGCAAGAGGCCCAAGGTGAAGTTCACCTGCCAAGATGGCTTGAGGAATTTTTAGGGCAAAAGTCCTCTGACTCTTGTCCTGCTCATTTGAATCGAAGGAATATATACTACTGCATAAAATGCGAAGTATCTGCTTGTCAGGATTGTATGTCATTAGGAGCTCATGAAGATCACCAAATACTACAAATCCGTAAATATTTTTACATGGATGTTGTACACCTGACTGATATGCAGCCATATATCAACTGCTCCCAGATCCAGCCCTTCAAAGCCAACGAGAACCAGGTTCTGAATTGTCGTCCGCGTTGTGGATCAACATTGGATGATGCAACATCATGCAACAATAGCAGCATAAAATCGAAAATAGCTAAAGCATATCCGTACTGCTCCATAACTTGCATGGTGAAAGCTGCAAGGAAGTCTTCAATTCCTCCTATCGTTTCCATCCAGGCTCCTCCTCCTCCTCCTCAGGAATCACTTGGGGAAATTTCTCAGCACTCTAAGCGAAAGAGGAAACGAAAAGGAACTCCACAAAGAGCTCCGTTTTTCTAA 588 0.4286 MSSSSSRKINEDAQEAQGEVHLPRWLEEFLGQKSSDSCPAHLNRRNIYYCIKCEVSACQDCMSLGAHEDHQILQIRKYFYMDVVHLTDMQPYINCSQIQPFKANENQVLNCRPRCGSTLDDATSCNNSSIKSKIAKAYPYCSITCMVKAARKSSIPPIVSIQAPPPPPQESLGEISQHSKRKRKRKGTPQRAPFF 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04108 195 ProSiteProfiles Zinc finger B-box type profile. 33 75 IPR000315 GO:0008270
Trre9g04108 195 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 16 194 - -
Trre9g04108 195 MobiDBLite consensus disorder prediction 158 195 - -
Trre9g04108 195 SUPERFAMILY B-box zinc-binding domain 32 85 - -
Trre9g04108 195 Pfam PLATZ transcription factor 76 147 IPR006734 -
Trre9g04108 195 Pfam B-box zinc finger 36 75 IPR000315 GO:0008270
Trre9g04108 195 Gene3D Classic Zinc Finger 37 79 - -
Trre9g04108 195 SMART bboxneu5 33 75 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04108 Trre-Chr9 48997056 48999679 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Trre9g04108 PLATZ 4.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04108 - - tpra:123919466 233.032