Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04099 ATGTTTGCGGAATGTTGTTGGACTCTTGGAGTCGCTGAGGGGTGTTCAAGTCTGTTGAGACTTGCAGGCTTAAGATCATCATCAATCACTTCGAAAGAAATGGGTCGTGGGACTGGAAAAGTAATCTTGAAAAAGATTCAAAATGAAAAAGTTCGTAAATCAGCTTTTATTCAAAGAAATAAAGGATTAACAAAAAAAGTGTCTGAGTTTTCTAAAAACTTTGGAGTTGAAGCTTGCTTAGTTGTGTATGATGGTGATGGTGATGGTAAACCAATGACTTGGCCACAAGACTCCACAACTATACAATCCATGCTTACAAAATATGAGCAACAAAAGAATGAGACAACTCCAAAGATATTTGATGTGAAGGATTATTTTGCAAATAAGAAGAATATGGTTGAAGCTGATATTAAACAAGTGCGCAAAAAGATCATGATGAACAAATATCCAACTTGGGGTCGATGTTTCAATAACATGGAAATGGAGCAACTCAAAGATTTCGTTGATATTGTAGATCTCAAGATTCAAGCTTGTAATCAAAGAATCAACATGCTGAAAAATATGCAACAAGGTGATGAAACTAGTTTCATGCAAGATACTGTTCAGATGCAAAGTGCGGCGCCGGAGAATGTTGCCTCTCTACAATCAATTCAACCTGAAGATCCTATGAACCCGCTTATTAATATTGATGAGATGATAGATTTTACTGATCTTGTGGAGTGGGATGATATAATGCCTCAAAATAATGTTTTCTCCTCAGATTCAAGTGAACTTGATGTCATGCATAACATCTATTATATGTAA 804 0.3582 MFAECCWTLGVAEGCSSLLRLAGLRSSSITSKEMGRGTGKVILKKIQNEKVRKSAFIQRNKGLTKKVSEFSKNFGVEACLVVYDGDGDGKPMTWPQDSTTIQSMLTKYEQQKNETTPKIFDVKDYFANKKNMVEADIKQVRKKIMMNKYPTWGRCFNNMEMEQLKDFVDIVDLKIQACNQRINMLKNMQQGDETSFMQDTVQMQSAAPENVASLQSIQPEDPMNPLINIDEMIDFTDLVEWDDIMPQNNVFSSDSSELDVMHNIYYM 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04099 267 SMART madsneu2 34 95 IPR002100 GO:0003677|GO:0046983
Trre9g04099 267 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 45 94 IPR002100 GO:0003677|GO:0046983
Trre9g04099 267 SUPERFAMILY SRF-like 37 115 IPR036879 GO:0003677|GO:0046983
Trre9g04099 267 Gene3D - 48 132 IPR036879 GO:0003677|GO:0046983
Trre9g04099 267 ProSiteProfiles MADS-box domain profile. 36 96 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04099 Trre-Chr9 48917771 48921971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04099 34 181 Type I MADS-box Gene Family AT5G55690 30.719 2.33e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre9g04099 SRF-TF 5.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04099 - - tpra:123922586 339.347