Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04092 ATGAAACTGAAAAAAACTCCTCTGGTTTTTCTCATATCGTGTTTAATTCTCATTGTTTTCAGTGCCGGCGCCGATCTAGCTTCTGATCGAGAAATTCTAATAAAACTACGCGCCTCTGTCGGTGGACGAACACTCTTTTGGAACACGACGGAGATAGACCCGTGTTTATGGACCGGCGTTATCTGCAATAACAAAAGAGTTACAGCTTTGAGATTACCGGCGATGGGTCTAACCGGTAATCTTCCTTTAGGTTTAGGTAATCTTACTGAATTGCAGACACTTTCTCTCCGGTTTAATGCGTTAACCGGAGAAATTCCTTCTGATTTTGGGAATCTAGTTTCTCTGAGAAATCTTTATCTTCATAGTAATTTTTTCTCCGGTGAGGTTCCTGAATTTTTCTTTAGTTTGAAGAATTTAGTTCGGTTGAATTTAGGTAAAAACAATTTCAGCGGTGAAGTTTCTGAGAAATTTAACAAGTTAACTCGTTTGGATACACTTTTTTTGGAGCAAAATCGGTTCACTGGTTCAGTTCCTGATCTTAATGTTCCTCCATTACATCAATTCAATGTGTCGTTTAATAATTTGACCGGTTCGATTCCGAAGAGGTTTTCGCGTTTAGATATAAGCGCTTTTTCTGGAAATTCGCTTTGTGGGAAACCTCTTCAAGTAACTTGTCCTGGAGAAAAAAGTAACAAAAATGGCTTATCTGGTGGAGCTATTGCTGGTATTGTGATTGGTTGTGTTTTTGGTTTTTTGTTGATTCTGATTCTTTTGGTGTTGTGTTGTAGAAAAAGAAGAAAAAGTGATTCTGATAATGTAGCACGTGCCAAGAGTGTTGAAGGTGATGTGTCACGTGAGAAAACAAGTAGAGATGTTGAGAGTGGCGGCGGTGGTGCTGATGGAGGGAGTTATTCGGGTTTGGCTTCGGCTTCAACAACGGCCTCGGCTTCTGGTGTATCATTAGAGAAGAGTTTGGTGTTTATTGGGAATGTGACTACAAAATTTAGTTTAGATGATTTGTTAAGAGCTTCTGCTGAAGTTTTGGGAAAAGGGACATTTGGAACAACTTATAAGGCAACATTGGAGATGGGAATGAGTGTGGCTGTGAAAAGGTTAAAGGATGTTACAGCAAGTGAAAGAGAATTTAGAGAGAAAATTGAACAAGTTGGGAAATTGGAGCATGAGAATTTGGTCCCACCTAGAGGTTATTATTTTAGTAAAGATGAAAAACTTGTTGTCTATGATTATATGCCAATGGGAAGCTTATCTGCACTCTTGCATGCAAATAATGGTGCTGGAAGGACTCCACTGAATTGGGAAACTAGGTCAACCATTGCCCTTGGTGCTGCTCAAGGGATTGCATACCTACACTCACAAGGTCCAACATCTTCCCATGGAAACATCAAGTCATCAAACATCCTTCTTACCAAATCTTACGAGCCTCGTGTCTCCGACTTCGGCCTCGCCTATCTCGCTCTTCCGACTGCTACCCCCAACCGAATTTCTGGCTACCGTGCACCAGAAGTCACCGATGCGCGCAAAGTATCCCAAAAAGCAGACGTCTACAGCTTCGGTATAATGCTTTTGGAGCTACTTACAGGGAAGGGGCCTACTCATTCTTCGTTGAATGAAGAAGGAGTTGACCTGCCTAGATGGGTTCAATCCATCGTTCAAGACGAGTGGAACAATGAGGTTTTCGACATGGAGCTTCTCAGGTACCAAAGTGTTGAGGAGGAAATGGTGAATCTATTACAGCTTGCTCTTGAATGTACTGCTCAATATCCTGATAAGAGACCTTCAATGGATGTCGTTGCTAGCAAGATCGAGAAAATTTGTCGTCCTAGTTTAGAGAAAGAGGGAGATAAGATTCTTGATGAATGA 1881 0.4131 MKLKKTPLVFLISCLILIVFSAGADLASDREILIKLRASVGGRTLFWNTTEIDPCLWTGVICNNKRVTALRLPAMGLTGNLPLGLGNLTELQTLSLRFNALTGEIPSDFGNLVSLRNLYLHSNFFSGEVPEFFFSLKNLVRLNLGKNNFSGEVSEKFNKLTRLDTLFLEQNRFTGSVPDLNVPPLHQFNVSFNNLTGSIPKRFSRLDISAFSGNSLCGKPLQVTCPGEKSNKNGLSGGAIAGIVIGCVFGFLLILILLVLCCRKRRKSDSDNVARAKSVEGDVSREKTSRDVESGGGGADGGSYSGLASASTTASASGVSLEKSLVFIGNVTTKFSLDDLLRASAEVLGKGTFGTTYKATLEMGMSVAVKRLKDVTASEREFREKIEQVGKLEHENLVPPRGYYFSKDEKLVVYDYMPMGSLSALLHANNGAGRTPLNWETRSTIALGAAQGIAYLHSQGPTSSHGNIKSSNILLTKSYEPRVSDFGLAYLALPTATPNRISGYRAPEVTDARKVSQKADVYSFGIMLLELLTGKGPTHSSLNEEGVDLPRWVQSIVQDEWNNEVFDMELLRYQSVEEEMVNLLQLALECTAQYPDKRPSMDVVASKIEKICRPSLEKEGDKILDE 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04092 626 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Trre9g04092 626 Gene3D Phosphorylase Kinase; domain 1 308 416 - -
Trre9g04092 626 SUPERFAMILY L domain-like 47 206 - -
Trre9g04092 626 CDD STKc_IRAK 348 611 - -
Trre9g04092 626 FunFam pollen receptor-like kinase 1 311 416 - -
Trre9g04092 626 Coils Coil 624 626 - -
Trre9g04092 626 SUPERFAMILY Protein kinase-like (PK-like) 345 606 IPR011009 -
Trre9g04092 626 Gene3D Ribonuclease Inhibitor 182 228 IPR032675 -
Trre9g04092 626 ProSiteProfiles Protein kinase domain profile. 342 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04092 626 FunFam Probable inactive receptor kinase At1g48480 417 619 - -
Trre9g04092 626 MobiDBLite consensus disorder prediction 273 300 - -
Trre9g04092 626 PANTHER OS05G0588300 PROTEIN 9 613 - -
Trre9g04092 626 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Trre9g04092 626 Gene3D Ribonuclease Inhibitor 26 181 IPR032675 -
Trre9g04092 626 Pfam Protein kinase domain 345 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04092 626 Gene3D Transferase(Phosphotransferase) domain 1 417 623 - -
Trre9g04092 626 MobiDBLite consensus disorder prediction 273 293 - -
Trre9g04092 626 FunFam Probable inactive receptor kinase RLK902 26 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04092 Trre-Chr9 48851993 48854661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04092 25 614 Receptor kinase-like Gene Family AT1G48480 56.090 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre9g04092 Pkinase 8.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04092 - - gmx:100801582 844.343