Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04090 ATGGGAAGACAACCTTGTTGTGACAAAGTGGGGTTGAAAAAAGGGCCATGGACTGCAGAGGAAGACAAGAGGCTCATCAATTTCATCCTTACTAATGGTCAATGTTGCTGGAGAGCTGTCCCTAAATTGGCAGGTCTATTAAGGTGTGGAAAAAGTTGTAGACTTAGATGGACAAATTATTTGAGGCCAGATTTAAAGAGAGGACTTTTATCAGAATATGAAGAAAAACTGGTGATTGATCTTCATGCTCAACTTGGGAACAGATGGTCTAAAATTGCTTCTCATCTACCCGGAAGGACGGACAATGAAATAAAAAATCATTGGAATACTCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTCTCACTCACAAACCACTAGTACTCACTAATGCAACTAATCAAACCCAAAATCAACCAATAGAAGAACAAGAGCTACACCAACCAATAGAAAAAGAACAACAAAACCAACAACCTTTGACAATTGACATTAATGATACCAAAATTGAATCTAAAATTGTGGACATGGAAAAACAAGAGACTTCAATTGAGTCATCAACCATCAGTGAAGTCAAAGAAAAAGATGATATTACAATAACACCCTTATTTGACACAATGGAGCTAATGGATGGATTTTGTATTGATGAAGTTCCAATGATAGAACCTAATGAGATTATAGTGTCTAATTCTTCTTCATCCACTTCTTCATCATCTTCATCAAATAATTCAACCACTTTCCTTGAAGATCTCTTTGATTTTGAATGGTCTAATAATGATAATAACAAGGAAGAGAATAATATGGCATTTTGGGATGATGACTTTATTAGTAGCTTGAATTTGCTAATTAATGATGATGATTATGATGTTAATAATGGTGAAAGAAAGCAAGAATTTGATGCTCATGCTCCTCTTAGCAACTACTCAAGAATGGTCACGGATTCAGAATCTTGGGCATATGGTTTATTTTGA 975 0.3508 MGRQPCCDKVGLKKGPWTAEEDKRLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKLVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPLTHKPLVLTNATNQTQNQPIEEQELHQPIEKEQQNQQPLTIDINDTKIESKIVDMEKQETSIESSTISEVKEKDDITITPLFDTMELMDGFCIDEVPMIEPNEIIVSNSSSSTSSSSSSNNSTTFLEDLFDFEWSNNDNNKEENNMAFWDDDFISSLNLLINDDDYDVNNGERKQEFDAHAPLSNYSRMVTDSESWAYGLF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04090 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre9g04090 324 CDD SANT 16 61 IPR001005 -
Trre9g04090 324 Gene3D - 70 162 - -
Trre9g04090 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre9g04090 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre9g04090 324 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 243 - -
Trre9g04090 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre9g04090 324 FunFam MYB transcription factor 11 67 - -
Trre9g04090 324 Gene3D - 11 67 - -
Trre9g04090 324 FunFam Myb transcription factor 71 133 - -
Trre9g04090 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre9g04090 324 CDD SANT 74 112 IPR001005 -
Trre9g04090 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre9g04090 324 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Trre9g04090 324 SMART sant 66 114 IPR001005 -
Trre9g04090 324 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04090 Trre-Chr9 48825262 48827810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04090 1 287 MYB Transcription Factor Family AT1G66230 57.000 6.89e-100 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre9g04090 Myb_DNA-binding 7.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04090 K09422 - gmx:100803624 433.335