Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04070 ATGGCACCTGTTTCATTGCCTCCAGGTTTCAGGTTTCACCCTACCGATGAAGAACTTGTTGCTTATTATCTAAATAAGAAGATTAATGGCCATAAGATTGATTTAGAGATCATAGCTGAAGTTGATCTCTATAAATGTGAACCGTGGGACTTGCCAGGAAAATCATTATTACCGGGAAAAGATATGGAGTGGTATTTCTTTAGCCCTCGCGATAGAAAGTATCCAAATGGATCAAGGACAAACCGAGCAACCAAATCTGGATATTGGAAGGCAACAGGAAAGGATCGAAAAGTGAATTCTCAAGCTCGAGCAGTGGGGATGAAGAAAACCCTAGTATACTATCACTACTAG 351 0.4046 MAPVSLPPGFRFHPTDEELVAYYLNKKINGHKIDLEIIAEVDLYKCEPWDLPGKSLLPGKDMEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQARAVGMKKTLVYYHY 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04070 116 Gene3D NAC domain 15 116 IPR036093 GO:0003677|GO:0006355
Trre9g04070 116 ProSiteProfiles NAC domain profile. 6 116 IPR003441 GO:0003677|GO:0006355
Trre9g04070 116 SUPERFAMILY NAC domain 4 115 IPR036093 GO:0003677|GO:0006355
Trre9g04070 116 Pfam No apical meristem (NAM) protein 7 115 IPR003441 GO:0003677|GO:0006355
Trre9g04070 116 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04070 Trre-Chr9 48661439 48665119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04070 1 114 NAC Transcription Factor Family AT1G65910 84.211 6.95e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre9g04070 NAM 3.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04070 - - tpra:123920692 243.047