Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04065 ATGGAAGCATGCAAAGAAGACAGTGAAATTGTTAACAAGAATAAATCTGTTTCTATTAAGGTTACCAACCGTCATGCGTTTGATTGCTGTAATTGTTCTGCATTCTTGACTAATATCCCGGTCTTTCAGGTCAAGAAATGCAGTCCGAAGTTACAATCATGCCCGAAGAATATCCAACGGATTGCTTTAGCAACTATTTCTTCTGAGTTCCTCATGATTCCATTTGGTTATTTTGGTTCTTCAGAACCTCTCAAGCTAGAAATTTGCATAACCCCAATGATGCAAATTTACATAATGGACCTGACTGGAAAGAGGACCCCCATGAGGGTGTATAGTTCAGACACTATAGTCAATGTGAAGTTAAAGATTCTTGACAAGAAAAGGATCCCACTGCACCAACAAAGTCTGATCTTTAACCATATGCAACTAGATGACAGAATGACCATTGCCGATTGCAACATCAAAGAGAAGTCAACCATCCACCTCATGCTCCGCCTCACTGGGAATTAG 510 0.4 MEACKEDSEIVNKNKSVSIKVTNRHAFDCCNCSAFLTNIPVFQVKKCSPKLQSCPKNIQRIALATISSEFLMIPFGYFGSSEPLKLEICITPMMQIYIMDLTGKRTPMRVYSSDTIVNVKLKILDKKRIPLHQQSLIFNHMQLDDRMTIADCNIKEKSTIHLMLRLTGN 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04065 169 PRINTS Ubiquitin signature 104 124 IPR019956 -
Trre9g04065 169 PRINTS Ubiquitin signature 125 145 IPR019956 -
Trre9g04065 169 PRINTS Ubiquitin signature 146 167 IPR019956 -
Trre9g04065 169 Pfam Ubiquitin family 101 166 IPR000626 GO:0005515
Trre9g04065 169 PANTHER UBIQUITIN 94 168 - -
Trre9g04065 169 ProSiteProfiles Ubiquitin domain profile. 94 169 IPR000626 GO:0005515
Trre9g04065 169 SMART ubq_7 94 165 IPR000626 GO:0005515
Trre9g04065 169 Gene3D - 90 169 - -
Trre9g04065 169 SUPERFAMILY Ubiquitin-like 75 169 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04065 Trre-Chr9 48636275 48637812 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04065 94 169 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 56.579 1.68e-21 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04065 - K04506 mtr:11432566 145.591