Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04064 ATGGAAGACCAAAAACATTCCACGGAGACTGTTGATTCCACAAGAGATAGCTCTGTTCCTCTGATGGTTTCCAACTCTAAATTGCTCGATTGTTACATTTGTTTCCAACCCTTAAGTATTCCTGTTTTCCAGTGTGATAATGGTCATATTGTTTGCTCTACTTGTTGTCCTAAACTTAAGAACAAGTGTCAGAAGTGCTCGTTCCGCATTAGCTCAAAACGTTGTAAAGTCATTGATAATCTATTGTCATCTATCGAAATGCCATGTCGGAATGCAAAACATGGTTGTAGGGAGAAAATACGTTACATTGGAAATAGAAAGCATGAAGAAGAATGCATCCATGAACCATGTTACTGCCCCTTCTCAAGTTGTGACTTTGTTGCATCGTCAGAAGTATTGTCCAACCATTTAAGCCTTAAACATGGTGATTCACTAATTGAATTTTGTTATGGTAACTCCTTCATTGTCTCGTTGAAGTCGAATGACGAAACCATTGTTCTTCAAGAGGAAAATGATGACAAACTATTTATTCTTAATAATAGTACTATGATTTTGGGGAATGTAGTCAACATTTGCTGCATTGGTCCTAACTCTTCTGAGTCCGAGTATAATTATGACATACTGCATAAGTCTCATATATGCAAACTGACTTTGCATTCTTGGGTGAAGAACGTTCAACGGGTTACTTCAGGAACTCTTTCATCTGAATTCCTTGTGATTCCAGTTGGTTCTTCAGAACCTCTCAGGCTAGAAATTTGCATAACCGCAATGATGCAAATTTACATAATGGACCAGACTGGAGAGAGGACCCCCCTGAGGGTTAATAGTTCAGACACTATAGTCAATGTGAAGTTAAAGATTGTTGACAAGAAAGGGATCCCAGTGCACCACCAATGTCTGATCTTTAATGGTAAGCGACTAGATGACAGAATGACCATTGCCGATTGCAACATCGAAGAGAAGTCAACCATCGACCTCGTGCTCCGCCTCACTGGGAATTAG 1002 0.3952 MEDQKHSTETVDSTRDSSVPLMVSNSKLLDCYICFQPLSIPVFQCDNGHIVCSTCCPKLKNKCQKCSFRISSKRCKVIDNLLSSIEMPCRNAKHGCREKIRYIGNRKHEEECIHEPCYCPFSSCDFVASSEVLSNHLSLKHGDSLIEFCYGNSFIVSLKSNDETIVLQEENDDKLFILNNSTMILGNVVNICCIGPNSSESEYNYDILHKSHICKLTLHSWVKNVQRVTSGTLSSEFLVIPVGSSEPLRLEICITAMMQIYIMDQTGERTPLRVNSSDTIVNVKLKIVDKKGIPVHHQCLIFNGKRLDDRMTIADCNIEEKSTIDLVLRLTGN 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04064 333 SUPERFAMILY TRAF domain-like 85 254 - -
Trre9g04064 333 ProSiteProfiles Zinc finger SIAH-type profile. 84 142 IPR013010 GO:0008270
Trre9g04064 333 Gene3D - 253 333 - -
Trre9g04064 333 Pfam Ubiquitin family 265 330 IPR000626 GO:0005515
Trre9g04064 333 SUPERFAMILY Ubiquitin-like 242 333 IPR029071 -
Trre9g04064 333 CDD RING-HC_SIAHs 29 67 - -
Trre9g04064 333 Pfam Seven in absentia protein family 74 235 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre9g04064 333 PRINTS Ubiquitin signature 268 288 IPR019956 -
Trre9g04064 333 PRINTS Ubiquitin signature 289 309 IPR019956 -
Trre9g04064 333 PRINTS Ubiquitin signature 310 331 IPR019956 -
Trre9g04064 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 12 257 IPR044286 -
Trre9g04064 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 137 IPR013083 -
Trre9g04064 333 SMART ubq_7 258 329 IPR000626 GO:0005515
Trre9g04064 333 ProSiteProfiles Ubiquitin domain profile. 258 333 IPR000626 GO:0005515
Trre9g04064 333 ProSitePatterns Ubiquitin domain signature. 284 309 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04064 Trre-Chr9 48633225 48635472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04064 258 333 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 56.579 8.17e-20 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04064 K04506 - mtr:11432566 395.971