Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04063 ATGGAGGCAAGTAAAGAAGACTGTGAAGTTGTTAACAAGAATAAATCTGTTTCTATTAAGGTTACCAACCGTCATGCGTTTGATTGCTGTAATTGTTCTGCATTCTTGACTAATATCCCTGTCTTTCAGTGTGATAACGGTCATATTGTATGCTCTACATGCTGCAATAAACTTGGGAACAAGTGTCACAAATGCTCAATGCATGTTACCTTAAAACGTTGTAGAGCCATTGAAAATATATTGCAATATGTCGAAATACCATGCCCAAATGAAAAACATGGTTGCAAGGAGACAATAAGTTGCGTTGGAAAGAGTAAGCATGAAGAAGAATGTATCTATGTGCCATGTTATTGTCCCGTTTCAGGTTGTGACTTTGTTGCCTCATCTGAAGTGTTGTCCGACCATTTCGGCCATAGACATTTTAAACCCAAATTTGCTTATGATCACTCCTTTTGTATCTCATTGAAGTTTGATGATGAAGCCATTGTTTTCCAACCGGCAATTGATGGCAAACTATTTATTCTCAATCATAGTACTATGCTTATGGGAAAGGCAGTACTAGTCAATATTAGTTGCATTGGTCCTAACTCTTCTGACGATGAATATAGTTATGATATATTGGCTAGATCTAAGAAATGCAGTCTGAAGTTACATTCTTGCCCGAAGAACGTCCAACGGATTGCTTCAGAAACTATTTTTTCTGAGTTCCTCATAATTCCATTTGGTTATTTTGGTTCTTTTGAACCTCTCACACTAGAGATTTGCATACATCGCATGATGCATATCTTCATCAAGATATTGACTGGGGAAATTTTTTCCCTAAGGGTAAAGAGTTCAGACACGATACTCGATGTGAAGCTCAAGATATTTGACAAGATAGGATACCCGGTGCATCACCAACGTCTGATCCTTATGATTAAGAACCTAGATGGCAGCCCAACCCGTAAGCAATTAGATGACAGCTCAACCCTTGCAGATTACAAAATCGAAGAGGACTCGACCCTCCACAGCGTCCTCCGCTTATGTGGAAATTAG 1035 0.3884 MEASKEDCEVVNKNKSVSIKVTNRHAFDCCNCSAFLTNIPVFQCDNGHIVCSTCCNKLGNKCHKCSMHVTLKRCRAIENILQYVEIPCPNEKHGCKETISCVGKSKHEEECIYVPCYCPVSGCDFVASSEVLSDHFGHRHFKPKFAYDHSFCISLKFDDEAIVFQPAIDGKLFILNHSTMLMGKAVLVNISCIGPNSSDDEYSYDILARSKKCSLKLHSCPKNVQRIASETIFSEFLIIPFGYFGSFEPLTLEICIHRMMHIFIKILTGEIFSLRVKSSDTILDVKLKIFDKIGYPVHHQRLILMIKNLDGSPTRKQLDDSSTLADYKIEEDSTLHSVLRLCGN 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04063 344 Pfam Ubiquitin family 262 341 IPR000626 GO:0005515
Trre9g04063 344 ProSiteProfiles Ubiquitin domain profile. 260 344 IPR000626 GO:0005515
Trre9g04063 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 136 IPR013083 -
Trre9g04063 344 Gene3D - 254 344 - -
Trre9g04063 344 SMART ubq_7 260 340 IPR000626 GO:0005515
Trre9g04063 344 ProSiteProfiles Zinc finger SIAH-type profile. 83 141 IPR013010 GO:0008270
Trre9g04063 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 13 259 IPR044286 -
Trre9g04063 344 SUPERFAMILY Ubiquitin-like 244 344 IPR029071 -
Trre9g04063 344 Pfam Seven in absentia protein family 73 234 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre9g04063 344 SUPERFAMILY TRAF domain-like 84 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04063 Trre-Chr9 48628931 48630732 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04063 260 344 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 52.941 4.37e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04063 K04506 - mtr:11432566 383.645