Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04061 ATGGAAGACCAAAAACCATGTCACTGCCCTCTTTTAGGTTGCGACTTTGTTGCATCATCAGAAGTGTTGTCCAACCATTTCAGCCATAAACACCGGGATTCTCAAATCCGATTTTCTTATGGTCACAACTTCGTTGTTTACTTGAAGTCTAAGCTGTCTGATGACGAAACCATTGTACTTCATGAGGAAAATGATGGAAAACTATTTATTATAAAAAATAAAACTATGTTTTTGGGAAATGTAGTCATTATTTGCTGCATTGGTCCTAACTCTTCTGAGTATAGTTATGATATGATGGCTACATCTCAGAAATGCAAACTGAAATTACAGTCTATTGCGAAGAATATTACGCAGTTTACTTTAGCAACTCTTTCATCAGGGTTCCTTGTGATTCCATTTAGTTCTTCAAGATTTCTCAAGCTAGAAATTTGCATAAAGCCAGTCCCCATGATGCAAATAATCATAAAGATGTTGGATCTTAGGGAGTTCCCTCTGAGTGTTAAGAGTTCAGATACGATTGACAATGTGATGCGGCAGATCTTTGACAAGGAAGGGATCCCATGTATCGATCAACGTCTGGTCTTTTTCGGTGAGCAACTAGAACACAGTCAGACCCTTGCCGATTGCAACATCGAAGAGAACTCAACCATCTATCTTGTCCTCCGCTTGATGGGGAGCTAG 681 0.3935 MEDQKPCHCPLLGCDFVASSEVLSNHFSHKHRDSQIRFSYGHNFVVYLKSKLSDDETIVLHEENDGKLFIIKNKTMFLGNVVIICCIGPNSSEYSYDMMATSQKCKLKLQSIAKNITQFTLATLSSGFLVIPFSSSRFLKLEICIKPVPMMQIIIKMLDLREFPLSVKSSDTIDNVMRQIFDKEGIPCIDQRLVFFGEQLEHSQTLADCNIEENSTIYLVLRLMGS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04061 226 PRINTS Ubiquitin signature 182 202 IPR019956 -
Trre9g04061 226 PRINTS Ubiquitin signature 161 181 IPR019956 -
Trre9g04061 226 PRINTS Ubiquitin signature 203 224 IPR019956 -
Trre9g04061 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 5 148 IPR044286 -
Trre9g04061 226 SMART ubq_7 151 222 IPR000626 GO:0005515
Trre9g04061 226 ProSiteProfiles Ubiquitin domain profile. 151 226 IPR000626 GO:0005515
Trre9g04061 226 SUPERFAMILY Ubiquitin-like 141 225 IPR029071 -
Trre9g04061 226 Pfam Ubiquitin family 153 223 IPR000626 GO:0005515
Trre9g04061 226 SUPERFAMILY TRAF domain-like 5 145 - -
Trre9g04061 226 Gene3D - 148 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04061 Trre-Chr9 48622200 48623172 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04061 151 226 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 57.895 2.39e-22 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04061 - K04506 mtr:11432566 229.18