Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04060 ATGGAGCCTGTTGATTCCGCAAGAGGTGTTAGTAAAAGAAGCTCTGAACCTCTGATAATTTCTAATCCTAAATTACTCGATTGTTGCATGTGTTTTCAACCCTTAAGTATTCCGGTCTTTCAGTGTGATAAAGGTCGTATTGTTTGCTCCATCTGCTGTTCTAGACTTGGGAACAAATGTCCGAAGTGCTCACTGTGCGTTAGCTCAGAACATTGTAAAGCCATTGAGAATCTATTGCTATCTATCGAAATTTCATGTCCAAATTCAAAATATGGTTGCCGCGAGAAAATAAGTTACATTCGATATAGAAATCATGAAGAAAAATGCATCTATGAACCATGTTACTGCCCCCTTTCAGGTTGTGACTTTGTTGCATCATCAGAAGTGTTGTCCAACCATTTCAGGAATAAACACGGGGATTCTCAAATTGAATTTTATTATGGTCGCTCCTTTGTTGTCTCCTTGAAGTCAAATGATGAAACCATTGTTTTTCAAGAGAAAAATGATGGAAAACTATTTATTCTCAATAATAGTACTATGAGTTTGGGAAATATGGTCAATATTTGTTGCATTTGGCCTAACTCTTTTGATTATGAGAGTGATTATAAAATATTGGCTAGGTCTCGGAAATGCAGACTGAAATTACATTCCATTGCGACGAATGTCCAACGGTTTACTTTAGGAACTCATTCATCAGAGTTCCTTCTGATTCCAATTGATTCTCTTGAACATCTCAAGCTACAAATTTGCATAAAGCCTACCAGGGAGCCTGGCATTTGGCAAATATTCATTAAGAACTTGGGAGGGCGGACGATCACCCTGGCCGTTAGTAGTTGGTACAAGATATTGGATGTGAAGTTTATGATTCGTGACATAGAAGGCATCGCAATGCAGCAACAACGTCTAATCTTTGCTGCTAGGGAATTAGATGACTACCACACCATTGCTGATTACAAACTTCAAAAGGAGTCAACCCTCCAACTTCTTACCCGCATGCTTGGGGACTAG 1008 0.3889 MEPVDSARGVSKRSSEPLIISNPKLLDCCMCFQPLSIPVFQCDKGRIVCSICCSRLGNKCPKCSLCVSSEHCKAIENLLLSIEISCPNSKYGCREKISYIRYRNHEEKCIYEPCYCPLSGCDFVASSEVLSNHFRNKHGDSQIEFYYGRSFVVSLKSNDETIVFQEKNDGKLFILNNSTMSLGNMVNICCIWPNSFDYESDYKILARSRKCRLKLHSIATNVQRFTLGTHSSEFLLIPIDSLEHLKLQICIKPTREPGIWQIFIKNLGGRTITLAVSSWYKILDVKFMIRDIEGIAMQQQRLIFAARELDDYHTIADYKLQKESTLQLLTRMLGD 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04060 335 PRINTS Ubiquitin signature 312 333 IPR019956 -
Trre9g04060 335 PRINTS Ubiquitin signature 270 290 IPR019956 -
Trre9g04060 335 PRINTS Ubiquitin signature 291 311 IPR019956 -
Trre9g04060 335 Gene3D - 254 335 - -
Trre9g04060 335 SUPERFAMILY Ubiquitin-like 254 334 IPR029071 -
Trre9g04060 335 ProSiteProfiles Ubiquitin domain profile. 260 335 IPR000626 GO:0005515
Trre9g04060 335 SMART ubq_7 260 331 IPR000626 GO:0005515
Trre9g04060 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 6 253 IPR044286 -
Trre9g04060 335 Pfam Seven in absentia protein family 74 155 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre9g04060 335 Pfam Ubiquitin family 262 332 IPR000626 GO:0005515
Trre9g04060 335 SUPERFAMILY TRAF domain-like 81 251 - -
Trre9g04060 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 134 IPR013083 -
Trre9g04060 335 ProSiteProfiles Zinc finger SIAH-type profile. 81 139 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04060 Trre-Chr9 48618577 48620616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04060 260 334 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 56.000 6.09e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04060 K04506 - mtr:11432566 364.77