Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04059 ATGAAGAACGGGTGTCAGAAGTGCAAATTGCACGTTAGCTCAAAACGTTGTAAAGTCGTTGAGAATTTATTGTTATCTATTGAGATGCCATGTCGGAATGCAAAACATGGTTGCGAGGAGAAAATAAGTTACGTTGGAAATCGAATGCATGAAAAAGAATGCATCCATGAACCATGTTACTGCCCCTTCTCAGGTTGTGACTTTGTTGCATCATCAAAAGTGTTGTCCAACCATTTCAGCAATAAACACGGGGATTCTCAAATCCGATTTTCTTATGGTCACAACTTCGTTGTTTCATTGAAGTCTAATTCTAATGATGAAACCATTGTTCTTCACGAGGAAAATGATGGAAAACTATTTATTCTCGGTAATAATACTATGATTTTGGGAAATGCAGTCAATATTTGCTGCATTGGTCCTAACGCTTTTGGGTATAGTTATGATATGATGGCTACATCTCAGAAATGCCAACTGAAATTACAGTCTTTTGCGGAGAATGTTCCGCAGTTTACTTTAGCAACTCTTTCATCAGGGTTCCTTATGATTCCATTTAGTTCTTCAGAACTTCTAAAGCTAGAAATTTGCATAAAGCCAGTCCCCATGATGCAAATATTCATAAAGAAGTTGGATCAGAGCTGGTTCCCTCTGAGGTTTAAGAGTTTAGACACGATAGGCGATGTGAAGCAGAAGATATTTGACAAGGAAGGGATCCCATGTAACGATCAACGTCTGATCTTTTGTGGTAAGCAACTAGAAGACAATCAGACCCTTGCCGATTACAACATTCAAGAGGAGTCAAGTAGTCAACCATCCACCTTGTCCTCCGCATGA 831 0.3911 MKNGCQKCKLHVSSKRCKVVENLLLSIEMPCRNAKHGCEEKISYVGNRMHEKECIHEPCYCPFSGCDFVASSKVLSNHFSNKHGDSQIRFSYGHNFVVSLKSNSNDETIVLHEENDGKLFILGNNTMILGNAVNICCIGPNAFGYSYDMMATSQKCQLKLQSFAENVPQFTLATLSSGFLMIPFSSSELLKLEICIKPVPMMQIFIKKLDQSWFPLRFKSLDTIGDVKQKIFDKEGIPCNDQRLIFCGKQLEDNQTLADYNIQEESSSQPSTLSSA 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04059 276 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 2 199 IPR044286 -
Trre9g04059 276 ProSiteProfiles Ubiquitin domain profile. 202 267 IPR000626 GO:0005515
Trre9g04059 276 Gene3D - 200 270 - -
Trre9g04059 276 SMART ubq_7 202 267 IPR000626 GO:0005515
Trre9g04059 276 PRINTS Ubiquitin signature 254 275 IPR019956 -
Trre9g04059 276 PRINTS Ubiquitin signature 233 253 IPR019956 -
Trre9g04059 276 PRINTS Ubiquitin signature 212 232 IPR019956 -
Trre9g04059 276 Pfam Ubiquitin family 204 266 IPR000626 GO:0005515
Trre9g04059 276 ProSiteProfiles Zinc finger SIAH-type profile. 26 84 IPR013010 GO:0008270
Trre9g04059 276 SUPERFAMILY TRAF domain-like 27 196 - -
Trre9g04059 276 Pfam Seven in absentia protein family 16 105 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre9g04059 276 SUPERFAMILY Ubiquitin-like 193 266 IPR029071 -
Trre9g04059 276 ProSitePatterns Ubiquitin domain signature. 228 253 IPR019954 -
Trre9g04059 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 79 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04059 Trre-Chr9 48615233 48616197 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04059 202 267 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 63.636 7.67e-21 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04059 - K04506 mtr:11432566 297.745