Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04058 ATGGAGCCATGCACCAAAGACAGTGACATGATCATTGATTCAGCGCAAGATGTTGGTAAGAATAACTCTGTTACTGTGTTGACTTCCAACCCAAAAGTGCTCGGTTGCTGCATTTGTTTTCGGGCCTTAAGTATTCCCCTCGTTCAGTGTGATAATGGCCATATTGTTTGTTCTACTTGTTTTCCTAAACTTCACAACAAGTGTCAGAAGTGCTCATTGCCCATTAGCTCAAAACGTTACAAAGCCGTTGAGAATCCATTGCAATCTATCCAAATGCCATGCCCGAATGAAAAATATGGCTGCAGGGAGATAATAAGTCACAATGGAAAGAGGAAACATGAAGAAGAATGCATCTACTTGCCATGTTACTGTCCCCTTTCAGGGTGTGATTTTGTTGCCTCATTAGAAGTGTTGTCCAACCATTTCAACCATAAACACGGGGATTCTCTGATCGAATTTTCTTATGGTCACACTTTTATCGTCTCCTTGAAGTCTAATGATGAAACCATTGTCCTTCAAGAGGAAAATGATGGCAAACTATTTATTCTCAACAATAGTACTATACTTTCAGGAAATGCAATCAATATTAGCTGCATTGATACTAACTCTTCTGAGGCTGAGTATAGTTATGATATATTGGCTAGGTCTAAGATATGCAATCTGAGGTTGCATTCTTTTCCGAAGAATGTCCAACGGGCTACTTTAGCAACTCTTTCACCACAATTTCTCGTGATTCCATTTGGTTATTTCAGTTCTTCTGAAACTCCCAAGCTAGAAATTTGCATAACCCCTAAGATGCAAATCTATGTAATGACTATGATGGGAAAGATGATCCCTCTGAGGGTTGAGAGTTCGGACACAATCGCCAATGTGAAGGCAAAGATTCTTGACAAGGAAGCAATCCCAGTGCACCTGCAACATCTGATGTTTTCCGATAAGCCACTATATGACAGCCAGACTCTTGCTAATTACAACATCCGAGAGAATTCAACCCTCCACCTCATTCTCCGCCTTCCCTAG 1020 0.4078 MEPCTKDSDMIIDSAQDVGKNNSVTVLTSNPKVLGCCICFRALSIPLVQCDNGHIVCSTCFPKLHNKCQKCSLPISSKRYKAVENPLQSIQMPCPNEKYGCREIISHNGKRKHEEECIYLPCYCPLSGCDFVASLEVLSNHFNHKHGDSLIEFSYGHTFIVSLKSNDETIVLQEENDGKLFILNNSTILSGNAINISCIDTNSSEAEYSYDILARSKICNLRLHSFPKNVQRATLATLSPQFLVIPFGYFSSSETPKLEICITPKMQIYVMTMMGKMIPLRVESSDTIANVKAKILDKEAIPVHLQHLMFSDKPLYDSQTLANYNIRENSTLHLILRLP 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04058 339 Gene3D - 262 339 - -
Trre9g04058 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 142 IPR013083 -
Trre9g04058 339 CDD RING-HC_SIAHs 34 72 - -
Trre9g04058 339 PRINTS Ubiquitin signature 297 317 IPR019956 -
Trre9g04058 339 PRINTS Ubiquitin signature 318 339 IPR019956 -
Trre9g04058 339 PRINTS Ubiquitin signature 276 296 IPR019956 -
Trre9g04058 339 ProSiteProfiles Zinc finger SIAH-type profile. 89 147 IPR013010 GO:0008270
Trre9g04058 339 SUPERFAMILY TRAF domain-like 89 262 - -
Trre9g04058 339 SUPERFAMILY Ubiquitin-like 249 338 IPR029071 -
Trre9g04058 339 Pfam Ubiquitin family 268 338 IPR000626 GO:0005515
Trre9g04058 339 SMART ubq_7 266 337 IPR000626 GO:0005515
Trre9g04058 339 ProSiteProfiles Ubiquitin domain profile. 266 339 IPR000626 GO:0005515
Trre9g04058 339 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 13 263 IPR044286 -
Trre9g04058 339 Pfam Seven in absentia protein family 83 233 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04058 Trre-Chr9 48607490 48610142 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04058 266 338 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 64.384 1.80e-24 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04058 K04506 - mtr:11432566 452.595