Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04057 ATGACTATACAAATATACGTAAAGAGTAGAGGGAGAGTTATTACCCTGTCGGTTAACAGTTCAGACACGGTATTCGATGTGATGGAAAAAATTTCTGAGAAGGAAGGAATACCAGTGCACCAGCAAATGTTGATGTTCAACGGTAAGCGTCTATCTTGGAGGGCGACTCTTGCCGATTACAACATCAAAGACAAGTCAACCCTCGACCTCATCCCCCGCATGATGGAGGACTAG 234 0.4444 MTIQIYVKSRGRVITLSVNSSDTVFDVMEKISEKEGIPVHQQMLMFNGKRLSWRATLADYNIKDKSTLDLIPRMMED 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04057 77 Gene3D - 2 71 - -
Trre9g04057 77 SUPERFAMILY Ubiquitin-like 3 75 IPR029071 -
Trre9g04057 77 ProSiteProfiles Ubiquitin domain profile. 3 77 IPR000626 GO:0005515
Trre9g04057 77 SMART ubq_7 3 73 IPR000626 GO:0005515
Trre9g04057 77 PANTHER UBIQUITIN 4 73 - -
Trre9g04057 77 PRINTS Ubiquitin signature 12 32 IPR019956 -
Trre9g04057 77 PRINTS Ubiquitin signature 54 75 IPR019956 -
Trre9g04057 77 PRINTS Ubiquitin signature 33 53 IPR019956 -
Trre9g04057 77 Pfam Ubiquitin family 5 71 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04057 Trre-Chr9 48586977 48587589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04057 3 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 54.795 1.14e-19 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04057 - K08770 mtr:25493109 78.1814