Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre9g04057 | ATGACTATACAAATATACGTAAAGAGTAGAGGGAGAGTTATTACCCTGTCGGTTAACAGTTCAGACACGGTATTCGATGTGATGGAAAAAATTTCTGAGAAGGAAGGAATACCAGTGCACCAGCAAATGTTGATGTTCAACGGTAAGCGTCTATCTTGGAGGGCGACTCTTGCCGATTACAACATCAAAGACAAGTCAACCCTCGACCTCATCCCCCGCATGATGGAGGACTAG | 234 | 0.4444 | MTIQIYVKSRGRVITLSVNSSDTVFDVMEKISEKEGIPVHQQMLMFNGKRLSWRATLADYNIKDKSTLDLIPRMMED | 77 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre9g04057 | 77 | Gene3D | - | 2 | 71 | - | - | |
Trre9g04057 | 77 | SUPERFAMILY | Ubiquitin-like | 3 | 75 | IPR029071 | - | |
Trre9g04057 | 77 | ProSiteProfiles | Ubiquitin domain profile. | 3 | 77 | IPR000626 | GO:0005515 | |
Trre9g04057 | 77 | SMART | ubq_7 | 3 | 73 | IPR000626 | GO:0005515 | |
Trre9g04057 | 77 | PANTHER | UBIQUITIN | 4 | 73 | - | - | |
Trre9g04057 | 77 | PRINTS | Ubiquitin signature | 12 | 32 | IPR019956 | - | |
Trre9g04057 | 77 | PRINTS | Ubiquitin signature | 54 | 75 | IPR019956 | - | |
Trre9g04057 | 77 | PRINTS | Ubiquitin signature | 33 | 53 | IPR019956 | - | |
Trre9g04057 | 77 | Pfam | Ubiquitin family | 5 | 71 | IPR000626 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre9g04057 | Trre-Chr9 | 48586977 | 48587589 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre9g04057 | 3 | 74 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 54.795 | 1.14e-19 | 74.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre9g04057 | - | K08770 | mtr:25493109 | 78.1814 |