Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04056 ATGCCTTCGCCCATCCTTCAACTCCGTCGTTCCATCGCCGCCGTCCTTCGCATTTCTTCTTCCAGCATCTTCTTCACGACTATGCAAATATTTGTAAGGAGTAGGAGTGGAATTATTACCCTATCGGTTAAGAGTTCAGACACGATAATCGATGTGAAGAAGAAAATTTTTGAGATGGAAGGAATACCAGTGCACCAGCAAATGTTGATGTTCAAGGGTAACCATCTAAATGACAACATGACTCTTGCCTATTACAACATCCAAGAGAAGTCAACCCTCAACCAGTACCCTGATCAGTACACCCTCGACCTCATGGCCCGCATGATGACAGACTAG 336 0.4494 MPSPILQLRRSIAAVLRISSSSIFFTTMQIFVRSRSGIITLSVKSSDTIIDVKKKIFEMEGIPVHQQMLMFKGNHLNDNMTLAYYNIQEKSTLNQYPDQYTLDLMARMMTD 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04056 111 ProSiteProfiles Ubiquitin domain profile. 28 93 IPR000626 GO:0005515
Trre9g04056 111 ProSitePatterns Ubiquitin domain signature. 53 78 IPR019954 -
Trre9g04056 111 PRINTS Ubiquitin signature 58 78 IPR019956 -
Trre9g04056 111 PRINTS Ubiquitin signature 37 57 IPR019956 -
Trre9g04056 111 PRINTS Ubiquitin signature 79 100 IPR019956 -
Trre9g04056 111 Gene3D - 24 108 - -
Trre9g04056 111 Pfam Ubiquitin family 30 95 IPR000626 GO:0005515
Trre9g04056 111 SUPERFAMILY Ubiquitin-like 26 94 IPR029071 -
Trre9g04056 111 SMART ubq_7 28 98 IPR000626 GO:0005515
Trre9g04056 111 PANTHER UBIQUITIN 28 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04056 Trre-Chr9 48579474 48581282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04056 28 94 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 58.824 4.65e-19 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04056 - K12825 tmf:EYB26_008202 78.1814