Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04055 ATGTTGCAATCAATGAAACAGCCATGTCCGAATGAAAAACATGGTTGCAGGGAGCTTTTAAGTTACATCCATGAGCCATGTTGGTGCCCCCTTTTAGGTTGTGACTTTGTTGCATCTTCAAAAGTGTTGTCTAACCATTTCAGCCATAAACACGCGGATTCTCAAATCAAATTTTCTTATGGTGACCTCTTTGTTGTCTCCTTGAAGTCTGCTGATAAAATCATTGTTCTTCATGAGGAAAATGATGGTAAACTATTTATTCTCAATAATAGTACTACGCTTTTGGGGAATACAGTCAATATTTGTTGCATTGGTCCTAATTCTTCCGAGTTCGAGGATAGTTATTATATATTTACTAGGTCTCAAATATCCAAATTGAAATTCGAGTCTTTGGCAAAGAACATCCAACATATTACTTTAGCAACTCTTTCATCAGAGTTCCTAGTGATTCCAGTTGGTTCTTCCGAACCTCTCAAACTAGAAATTTGCATACCCCCCCACAAGATTCAAATATTCATAAAGGGCTTGGATAATTGGTGGCACGACCTCGAGGTTAAAAGTTCAGACACAATAGGCAATGTGAAGCACAAGATTATTGACAAGCTTCGCATAAAGATCCCAGTGCACCAGCTATATCTGCTCTTTCAAAGTAAGGCACTAGATGACAGATTGACCATTGCTAATTACAACATCCAAGAGCACTCAAACCTCCACCTTCTCTGCCGCGTCATTGGGGACTAG 741 0.3927 MLQSMKQPCPNEKHGCRELLSYIHEPCWCPLLGCDFVASSKVLSNHFSHKHADSQIKFSYGDLFVVSLKSADKIIVLHEENDGKLFILNNSTTLLGNTVNICCIGPNSSEFEDSYYIFTRSQISKLKFESLAKNIQHITLATLSSEFLVIPVGSSEPLKLEICIPPHKIQIFIKGLDNWWHDLEVKSSDTIGNVKHKIIDKLRIKIPVHQLYLLFQSKALDDRLTIANYNIQEHSNLHLLCRVIGD 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04055 246 Gene3D - 165 246 - -
Trre9g04055 246 Pfam Ubiquitin family 171 242 IPR000626 GO:0005515
Trre9g04055 246 PRINTS Ubiquitin signature 223 244 IPR019956 -
Trre9g04055 246 PRINTS Ubiquitin signature 179 199 IPR019956 -
Trre9g04055 246 ProSiteProfiles Ubiquitin domain profile. 169 246 IPR000626 GO:0005515
Trre9g04055 246 SUPERFAMILY TRAF domain-like 8 151 - -
Trre9g04055 246 SMART ubq_7 169 242 IPR000626 GO:0005515
Trre9g04055 246 SUPERFAMILY Ubiquitin-like 164 245 IPR029071 -
Trre9g04055 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 2 164 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04055 Trre-Chr9 48576850 48577666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04055 169 245 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 51.948 1.56e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04055 K04506 - mtr:11432566 256.529