Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04054 ATGGAGCCATGCACCAAAGACAGTGAAGAGAACATTGATTCTGGAAAAGATGAGACAATAAGTTACAGTGAGAAGAGGAAACATGAAGAAGAATGCATCTATGTGCCATGTTACTGCCCCCTTTCTGGTTGTGACTTTGTTGCCTCATCTGAAGTTTTATACGACCATTTCAGCCATAATCATGGGGATTCTCGAATCCACTTTTCATATGGTTCCTCCTTTGTTGTCTCCTTGAAGCCTAATGATGAAGTCATTGTTCTTCAAAAGCAAGCTAATGGAAAATTGTTTGTTCTTAATAATAGTAAAGTGCACTTGGGAAATGCAGTCAATATTAGCTGCATTGGTCCTAACTCTTCTGAGTCAAGGTTTCGTTATGATATATTGGCTAGGTCCGAGATAGGCTGTTTGAAGTTACAATATTTTATGAAGAATATACAACAAAGTACTTTAGCAACTCCTTCTTCTGAGTTCCTTTTGATTCCATTTACTTATTTTGAACCTCTAAAGCTAGAAATTTGCATAACTCCAAAGATACTGCAAATTTTTGTAAAGAAACTGATCAATGGAAGACAGACGATCCCCTTAAAGGTGGAGTGGTCAGACACAATAGCCGATTTGAAGGAAAAGTACGCGAACGTGGAAGGGACCTCAGTGAACCGGCAGCGTTTGATCTTTGATAGGCAGCAACTACATGACGACCGCACCATTGCAGATTACAACATCCAAGAGAATACAATCACCCTTTGCTTTTCTTATTTAAGCACTTGA 768 0.3893 MEPCTKDSEENIDSGKDETISYSEKRKHEEECIYVPCYCPLSGCDFVASSEVLYDHFSHNHGDSRIHFSYGSSFVVSLKPNDEVIVLQKQANGKLFVLNNSKVHLGNAVNISCIGPNSSESRFRYDILARSEIGCLKLQYFMKNIQQSTLATPSSEFLLIPFTYFEPLKLEICITPKILQIFVKKLINGRQTIPLKVEWSDTIADLKEKYANVEGTSVNRQRLIFDRQQLHDDRTIADYNIQENTITLCFSYLST 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04054 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 57 IPR013083 -
Trre9g04054 255 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 12 175 IPR044286 -
Trre9g04054 255 Pfam Ubiquitin family 181 245 IPR000626 GO:0005515
Trre9g04054 255 Pfam Seven in absentia protein family 13 150 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre9g04054 255 SUPERFAMILY Ubiquitin-like 175 245 IPR029071 -
Trre9g04054 255 SUPERFAMILY TRAF domain-like 18 174 - -
Trre9g04054 255 ProSiteProfiles Zinc finger SIAH-type profile. 4 62 IPR013010 GO:0008270
Trre9g04054 255 Gene3D - 176 254 - -
Trre9g04054 255 SMART ubq_7 179 251 IPR000626 GO:0005515
Trre9g04054 255 ProSiteProfiles Ubiquitin domain profile. 179 245 IPR000626 GO:0005515
Trre9g04054 255 PRINTS Ubiquitin signature 191 211 IPR019956 -
Trre9g04054 255 PRINTS Ubiquitin signature 212 232 IPR019956 -
Trre9g04054 255 PRINTS Ubiquitin signature 233 254 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04054 Trre-Chr9 48572816 48574877 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04054 179 250 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 52.055 5.98e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04054 - K04506 mtr:11432566 273.863