Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04053 ATGCACCAACAAGATCTGTTATTTTCCGGTAGACGTCTAGTTGATGACCTTACACTTGCCGATTACAACATTCAAGAGAAGTCAACCCTCAACCTTATGCTCCGCCTAATTGGGGATGTTGACCACTGTGCCATCCTCGATTACTACATCCAAGAAACCAAAAGCCAACGCCTCTTAACCTTGACTGAGGACTCTACAATTTCTCCGTTGCAATTCAGTGTGATAATGGTCATATTGTTTGCTCTACCTGCTGTCCTAATATGGTTGCAAGGAGACAATAAGTTACACCATAATCATGGGGATTCTCGAATCCACTTTTCATATGGTTCCTCCTTTGTTGTCTCCTTGAAGCCTAATGATGAAGTCATTGTTCTTCAAAAGCAAGCTAATGGAAAATTGTTTGTTCTTAATAATAGTAAAGTGCACTTGGGAAATGCAGTCAATATTAGCTGCATTGGTCCTAACTCTTCTGAGTCAAGGTTTCGTTATGATATATTGGCTAGGTCCGAGATAGGCTGTTTGAAGTTACAATATTTTATGAAGAATATACAACAAAGTACTTTAGCAACTCCTTCTTCTGAGTTCCTTTTGATTCCATTTACTTATTTTGAACCTCTAAAGCTAGAAATTTGCATAACTCCAAAGATACTGCAAATTTTTGTAAAGAAACTGATCAATGGAAGACAGACGATCCCCTTAAAGGTGGAGTGGTCAGACACAATAGCCGATTTGAAGGAAAAGTACGCGAACGTGGAAGGGACCTCAGTGAACCGGCAGCGTTTGATCTTTGATAGGCAGCAACTACATGACGACCGCACCATTGCAGATTACAACATCCAAGAGAATACAATCACCCTTTGCTTTTCTTATTTAAGCACTTGA 882 0.398 MHQQDLLFSGRRLVDDLTLADYNIQEKSTLNLMLRLIGDVDHCAILDYYIQETKSQRLLTLTEDSTISPLQFSVIMVILFALPAVLIWLQGDNKLHHNHGDSRIHFSYGSSFVVSLKPNDEVIVLQKQANGKLFVLNNSKVHLGNAVNISCIGPNSSESRFRYDILARSEIGCLKLQYFMKNIQQSTLATPSSEFLLIPFTYFEPLKLEICITPKILQIFVKKLINGRQTIPLKVEWSDTIADLKEKYANVEGTSVNRQRLIFDRQQLHDDRTIADYNIQENTITLCFSYLST 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04053 293 Gene3D - 214 292 - -
Trre9g04053 293 Gene3D - 1 38 - -
Trre9g04053 293 PANTHER UBIQUITIN 218 286 - -
Trre9g04053 293 PRINTS Ubiquitin signature 250 270 IPR019956 -
Trre9g04053 293 PRINTS Ubiquitin signature 271 292 IPR019956 -
Trre9g04053 293 PRINTS Ubiquitin signature 229 249 IPR019956 -
Trre9g04053 293 ProSiteProfiles Ubiquitin domain profile. 1 39 IPR000626 GO:0005515
Trre9g04053 293 SUPERFAMILY Ubiquitin-like 213 283 IPR029071 -
Trre9g04053 293 ProSiteProfiles Ubiquitin domain profile. 217 283 IPR000626 GO:0005515
Trre9g04053 293 Pfam Ubiquitin family 1 36 IPR000626 GO:0005515
Trre9g04053 293 Pfam Ubiquitin family 219 283 IPR000626 GO:0005515
Trre9g04053 293 SMART ubq_7 217 289 IPR000626 GO:0005515
Trre9g04053 293 SUPERFAMILY Ubiquitin-like 2 39 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04053 Trre-Chr9 48569278 48574877 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04053 3 38 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 63.889 4.62e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04053 - K04506 mtr:11432566 197.208