Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04052 ATGAGTAAATTCCTTCCTTTGGTTCTTTCCAACCCACAAATGCTTGATTGCTGCAATTGTTTTCAAACTTTAAGTATTCCAATCTTTCAGTGTGATAATGGTCATCTTGTTTGCTCTACCTGTTGTTCCGAATTTTCGAATATGTGTCAAGAGTGCTCAAAATGCATTACCTTAACACGTTGTATAGCCTTTGAGAATTTGTTGCAATCTCTTGAAAGACCATGTCCGAATGAAAAATATGGTTGCAGAGAGACAATAAGTTATAGCGGAAACAAGAATCATGAAGAATGTATCTATGTGCCATGTTATTGCCCTCTTCCAGGTTGTGACTTTGTTGCTTCATCTGAAGTGTTATCCAACCATGTCAGCTGTAAGCATGAGGATGAGGATTCTCGATTCCTCTTTGCGTATGGAAACTCCTTCGATGTCTCCCTCAAGTTTGTTGACGAAGCCATTGTTCTTCAAGAGGAAAATGATGGAAAACTGTTTATTCTTACTATTAATAGTAATCTTATGGGAAATGCAATCAATATTAGCTGCATTGGTCCTAATTCTTCTGAGCCAGGGCATTATTATGATATATTGGCCAAGTCCCAAGTAAGCAAGATGAAGTTACAATCTGTTACAAAGAATATTCAACAAAGTACTTTAACACTTGCTTCATCTGAGTACCTTATGATTCCATTTGGTTTTTTTGAATCTCTCGAGCCAAAAATTTGCATAACCTTCAAGATGCAAATCTACGTAAATACGATGGGTGGAAAGATGATCCCCCTGAGGGTAAAGAATTCAGACACGATAGTCAGTGTGAAGGAGAAGATTCTTGAACAGGAAGAGATGCCGCCAATACACCAACAAAATCTGTTATTTTCCGGTATACCACTTGCGGATAACCTGACACTTGCTGATTACAACATTCAAGAGAAGTCAACCCTCGACCTTATGCTCCGCCTAATTGGGGACTAG 966 0.3851 MSKFLPLVLSNPQMLDCCNCFQTLSIPIFQCDNGHLVCSTCCSEFSNMCQECSKCITLTRCIAFENLLQSLERPCPNEKYGCRETISYSGNKNHEECIYVPCYCPLPGCDFVASSEVLSNHVSCKHEDEDSRFLFAYGNSFDVSLKFVDEAIVLQEENDGKLFILTINSNLMGNAINISCIGPNSSEPGHYYDILAKSQVSKMKLQSVTKNIQQSTLTLASSEYLMIPFGFFESLEPKICITFKMQIYVNTMGGKMIPLRVKNSDTIVSVKEKILEQEEMPPIHQQNLLFSGIPLADNLTLADYNIQEKSTLDLMLRLIGD 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04052 321 SUPERFAMILY TRAF domain-like 71 225 - -
Trre9g04052 321 Pfam Ubiquitin family 247 318 IPR000626 GO:0005515
Trre9g04052 321 Pfam Seven in absentia protein family 60 225 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre9g04052 321 ProSiteProfiles Ubiquitin domain profile. 245 321 IPR000626 GO:0005515
Trre9g04052 321 Gene3D - 241 321 - -
Trre9g04052 321 SMART ubq_7 245 317 IPR000626 GO:0005515
Trre9g04052 321 PRINTS Ubiquitin signature 255 275 IPR019956 -
Trre9g04052 321 PRINTS Ubiquitin signature 298 319 IPR019956 -
Trre9g04052 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 7 241 IPR044286 -
Trre9g04052 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 122 IPR013083 -
Trre9g04052 321 ProSiteProfiles Zinc finger SIAH-type profile. 70 127 IPR013010 GO:0008270
Trre9g04052 321 SUPERFAMILY Ubiquitin-like 241 320 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04052 Trre-Chr9 48564635 48567320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04052 245 320 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 57.895 1.91e-20 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04052 K04506 - mtr:11432566 375.555