Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04051 ATGGAACCTTTTATGATTTCCAACCCTAGTTTGCTGGATTGTTGCTATTGTTTTCAATCCTTAACTATTCCCGTCTTTCAGTGCGATAATGGTCATATTGTTTGCTCTACCTGCTGTCCTAAACTCAGGAACAAGTGTAACAAGTGCTCATTGAGCATTAGCTCAAAACGGTGTACAGCCATTGAGAATCTATTGCAATCTATCAAAATATCATGTCCAAATGCAAAACTTGGTTGCGTAGAGAAAATAAGTTACAGTAGAAAGAGGAAGCATGAAGAAGAATGTATCTATGACAAATGTTACTGCCCTATTTCAGGTTGTGGCTTTTTTGCTTCATTAGAAGTGTTGTCCAACCATTTCAGCCGGAAACACAAGGACTCTCAAATTAAATTTTCTTTCGGTCATTCCTTTATCGTCCCGTTAAGGTCTACTGATGAAACCATTGTTCTTCAAGAAGAAAACGATGGCAAACTATTTATTCTAAATCATAGTATTATGACTTTGGGGAATGTAGTCAATATTTGCTGCATTGGTCCGAATACTTTAGAGTCCGAGTATAGTTATGATATACTGGTTAAATCTGAGATAGGCAAATTGAAATTACAATCTTTTGTGAAGAATGTCCGACGATTTACTTTAGGAACTATTTCATCAGGGTCCCTTGTGATTCCAGTTGGTTCTTCATCTGAATCTCTCAAGCTGGAAATTTGCATAACATCCCCCATGATGCAAATTTACGGAAGGAACTTGACAGGACGACTGATCCCATTGAAAAAGTCAATCATCCACCTTGTCATTCGCTTGACTGGGAGCTAG 816 0.3787 MEPFMISNPSLLDCCYCFQSLTIPVFQCDNGHIVCSTCCPKLRNKCNKCSLSISSKRCTAIENLLQSIKISCPNAKLGCVEKISYSRKRKHEEECIYDKCYCPISGCGFFASLEVLSNHFSRKHKDSQIKFSFGHSFIVPLRSTDETIVLQEENDGKLFILNHSIMTLGNVVNICCIGPNTLESEYSYDILVKSEIGKLKLQSFVKNVRRFTLGTISSGSLVIPVGSSSESLKLEICITSPMMQIYGRNLTGRLIPLKKSIIHLVIRLTGS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04051 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 120 IPR013083 -
Trre9g04051 271 SUPERFAMILY TRAF domain-like 67 238 - -
Trre9g04051 271 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 4 240 IPR044286 -
Trre9g04051 271 Pfam Seven in absentia protein family 57 210 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre9g04051 271 ProSiteProfiles Zinc finger SIAH-type profile. 67 125 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04051 Trre-Chr9 48561462 48562977 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04051 11 236 C3H Transcription Factor Family AT2G41980 28.279 1.64e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04051 K04506 - mtr:11432566 337.421