Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04050 ATGGGAGATTATACCTCAAAAGTTGTTAACTCTGATTCTTGGATGATTTCCGACCCTCGTGTATTTGATTGCTGCAATTGTTTGGAATTCTTGACTACCCCTATCTTTGAGTGTGATAATGGTCATATTTTCTGCTCTACTTGCCATTCTAAGTTTGGGAACAAGTGTCAAAAATGCTCTATGGACATTACCTTAAAACGCTCAAGAGCAATTGAGAATCTATTGCAATCTATCAAATTCTCATGCATGAATGAAAAACATGGGTGCAAAGAGAGAATCAATTACAATGGAATGAGGAAGCATGAAGAAGAATGTATCTATGTGCCATGTTACTGTCCCCTTTTAGGTTGTAAATTTGTTGCCTCATCTAAAGTGTTATCCAACCATTTCAGGCAAAAGCACGCGGATTCTCGAATCCAATTTTTATATGATAGCCCATTTTTTGTCACCTTGAAATCTAATGAAGGAGCCATTATACTTCAAGAGCAAAATGTTGGGAAACTATTTGTTCTCAACAATAGTACTTTGACTGTTGGAAATGCCGTTAATATTTGTTGCATTGGTCCTAACTCTTTTGAGTCGAAACATAATTATGATATATTAGCTATGTCTCCGACATGCAAACTGAAGTTACAATCTTTTGTGAAGAATGTCCAACAATTTACCTTTAAAGCTCCTTCCTCGGAGTTCCTTGTGATTTCATTTGGTTCTTCTGAATCTCAAAAGCTAGAAATTTGCATAACTACCTATGTGATGCAGATCAACCTATTAAGATCGAGTGGTAGGAGGTTCCCATTGACGGTCAAGAGTTCAGACACAATAATCGATGTGAAGAAGAAGATTCATGAAGAGGAAGACGTCCCATTTTATTAG 873 0.3666 MGDYTSKVVNSDSWMISDPRVFDCCNCLEFLTTPIFECDNGHIFCSTCHSKFGNKCQKCSMDITLKRSRAIENLLQSIKFSCMNEKHGCKERINYNGMRKHEEECIYVPCYCPLLGCKFVASSKVLSNHFRQKHADSRIQFLYDSPFFVTLKSNEGAIILQEQNVGKLFVLNNSTLTVGNAVNICCIGPNSFESKHNYDILAMSPTCKLKLQSFVKNVQQFTFKAPSSEFLVISFGSSESQKLEICITTYVMQINLLRSSGRRFPLTVKSSDTIIDVKKKIHEEEDVPFY 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04050 290 SUPERFAMILY TRAF domain-like 77 248 - -
Trre9g04050 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 130 IPR013083 -
Trre9g04050 290 Gene3D - 233 290 - -
Trre9g04050 290 SUPERFAMILY Ubiquitin-like 251 288 IPR029071 -
Trre9g04050 290 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 11 248 IPR044286 -
Trre9g04050 290 Pfam Seven in absentia protein family 68 221 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre9g04050 290 ProSiteProfiles Zinc finger SIAH-type profile. 77 135 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04050 Trre-Chr9 48552609 48558724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04050 21 134 C3H Transcription Factor Family AT2G41980 28.448 2.27e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04050 K04506 - mtr:11432566 327.791