Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04031 ATGAAGCTTTCAACATCAGGAATGAGTCAGCAGGGACATGAAGGAGTAGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAAGGTCATAGTGAGCAGGTTTCTGCTACTACTAACAGAGAAATTGATGGCCAAATACCAAATTATCCGAGTTTGCCGCCTCAGTTGATATGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACTGATGAAGTGTATGCTCAAATGACGTTACAGCCGTTGACTCCGCAAGAGCAGAAAGATACGTTTCTTCCTATGGAATTGGGGATTCCAAGTAAGCAGCCTTCAAATTATTTTTGCAAGACATTGACAGCGAGTGATACCAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTTCCTCCATTGGATTTCTCACAGCAACCTCCTGCACAAGAACTAATTGCCAGGGATCTCCACGACGTTGAGTGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACCACAGGTTGGAGTGTATTTGTTAGTGCCAAAAGACTTGTAGCTGGAGATTCTGTGCTTTTCATTTGGAATGAAAAAAATCAACTTCTTTTGGGAATCCGTCGAGCTAGTCGGCCACAAACTGTTATGCCATCATCAGTTCTTTCCAGTGATAGTATGCACATTGGACTTCTTGCAGCTGCAGCCCATGCTGCTGCAACTAATAGCTGTTTTACAGTGTTCTTTAATCCAAGGGCTAGTCCATCCGAGTTTGTCATACCACTTTCAAAATATATAAAAGCTGTGTACCATACACGTGTTTCTGTTGGTATGCGCTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTGCGCAGGTACATGGGTACCATAACTAGCATAAGTGACATGGATCCTGTTCGGTGGCCGAACTCTCATTGGAGATCTGTTAAGGTCGGTTGGGATGAATCAACAGCTGGGGAGAGACAGCCACGAGTATCGTTATGGGAAATCGAGCCTTTAACAACATTTCCAATGTATCCATCCCTATTTCCTCTTAGATTGAAACGACCTTGGCATCCCGGCTCTTCTTCTTTCCTTGATGGCAGAGACGAAGCAACAAATGGACTAATGTGGCTGAGAGGCGGTCCTGGAGACCAAGGTCTTAATTCCATGAATTTTCAAGGTGCTGGATTGTTGCCATGGATGCAGCAGAGAATGGATCCAGCTTTACTCGGAAACGATCATAACCAACAATACCAAGCCATGCTGGCTGCCGCTGGTTTGCAGAATCAAGGGCATGTAGATCTTTTGAGGCAACAAATGATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAATCTCAGTCCTTTGCAGCTTCAGCAACAGCAAGCAATTCAACAATCTGTATCGACTAATATCCTTCAACCACAAGGCCAAGTGTTGGCACACAGCAATCGCGAAAACCAAGCACAGCAACCGCAACAGCAACACACTTATCAAGATTCACTCTTAATTCAAGGTGATCCACTCCATCAGAAGCAACACTCTAGTTTGCCATCACCATCATATTCAAAACATGATTTCTTAGATTCAGGCATGAAGTTTACTGCTTCAGCTTCGCCTAGTCAAAACATGCTCGGTTCGCTTTGTTCTGAAGGGAGTGGAAATCTCTTGAACTTATCAAGAAGTGGTCACTCTATGCTGACTGAACAGTTACCTCAGCAATCATGGGAATCAAAGTATTCACCTTCGCAGGTCGATGGCATTGGAAACTCAATGTCGCATGTGCAATATTCCGGGAGAGATACAGCAATTGTACCACCGCATTGCACCTCAGATTCCCAAAATTCTGTTCTGTTTGGGGTCAATATCGATTCGTCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATACTACTGCATCCGCTGATGCCGATGCATCAACAATGCCATTAGGGGAGTCTGGTTTCCAGGGTTCTCCATATCCTTGCATGCAGGATTCATCAGAACTGTTGCAAAGTGCAGGGCAGGTTGATGCTCAAAACCAGATGCCGACATTTGTGAAGGTATACAAATCAGGTTCGGTAGGGCGCTCACTTGACATCTCGCGGTTCAGCAGCTATCACGAGCTGCGGGAGGAGTTGGCTCAGATGTTTGGAATCGAGGGGAAATTTGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTACATCAAAATACTTTCTCCTGAAGATATTCAGAAAATGGGAGAACAAGCCATAGAAACCCTTGGTCCAAGTTCTGGACAAAGGCCGAATAACACTGGTGCAGAATCTCACGACATTGTTTCTGGACTACCATCATTAGGCTCACTTGATTACTGA 2505 0.4495 MKLSTSGMSQQGHEGVEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREIDGQIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITSISDMDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSFLDGRDEATNGLMWLRGGPGDQGLNSMNFQGAGLLPWMQQRMDPALLGNDHNQQYQAMLAAAGLQNQGHVDLLRQQMMNFQQPFNYLQQSGNLSPLQLQQQQAIQQSVSTNILQPQGQVLAHSNRENQAQQPQQQHTYQDSLLIQGDPLHQKQHSSLPSPSYSKHDFLDSGMKFTASASPSQNMLGSLCSEGSGNLLNLSRSGHSMLTEQLPQQSWESKYSPSQVDGIGNSMSHVQYSGRDTAIVPPHCTSDSQNSVLFGVNIDSSGLLLPTTVPRYTTASADADASTMPLGESGFQGSPYPCMQDSSELLQSAGQVDAQNQMPTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAIETLGPSSGQRPNNTGAESHDIVSGLPSLGSLDY 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04031 834 Gene3D - 703 797 - -
Trre9g04031 834 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre9g04031 834 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Trre9g04031 834 FunFam Auxin response factor 703 797 - -
Trre9g04031 834 SMART B3_2 128 230 IPR003340 GO:0003677
Trre9g04031 834 FunFam Auxin response factor 292 364 - -
Trre9g04031 834 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 797 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre9g04031 834 ProSiteProfiles PB1 domain profile. 708 792 IPR000270 GO:0005515
Trre9g04031 834 Pfam AUX/IAA family 701 792 IPR033389 -
Trre9g04031 834 MobiDBLite consensus disorder prediction 803 834 - -
Trre9g04031 834 Gene3D - 126 229 IPR015300 -
Trre9g04031 834 SUPERFAMILY CAD & PB1 domains 708 782 - -
Trre9g04031 834 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Trre9g04031 834 CDD B3_DNA 127 228 IPR003340 GO:0003677
Trre9g04031 834 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Trre9g04031 834 Gene3D - 292 364 - -
Trre9g04031 834 MobiDBLite consensus disorder prediction 803 821 - -
Trre9g04031 834 FunFam Auxin response factor 126 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04031 Trre-Chr9 48362128 48369718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04031 98 800 B3 DNA Binding Superfamily AT5G37020 67.080 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre9g04031 AUX_IAA 7.7e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04031 - - gmx:100784804 1471.06