Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04025 ATGGGAAGACACTCTTGCTGCTACAAGCAGAAGTTAAGGAAAGGTCTTTGGTCTCCAGAAGAAGATGAGAAACTTCTCAATTACATTACCAAACATGGTCATGGATGTTGGAGTTCTGTCCCTAAACTAGCTGGATTGCAGAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATTTGAGGCCTGATTTGAAAAGAGGAGCATTTTCACAACAGGAAGAGAATTTGATCATTGAACTTCATGCAGTACTTGGTAACAGATGGTCTCAGATTGCGGCACAATTACCAGGAAGAACAGACAATGAGATTAAAAATCTATGGAATTCATGTCTCAAGAAAAGATTGAGACAAAGTGGCATTGATCCAAACACTCATAAACCACTTTCTGAGATTGAAAATCATGACAATGAAAAACCAAACAAAAGTAATCATCAAAAAGCCTCAGTTTTATCCAATGAAGTTATGAATTTGGTAATTGAACCTACAAAAACTTCTCTAGAAGGATACCCTCTAGAAGTTTCAACAAGCTCTAAGATCAACAACAGTACTAGTAGCAGCCATGAATTATTCCTAGATACTACCAGGTTTGGTTCTACAGGTTATTTTTCTTTTCAGAACTTGAACTTTGGATCAAACATAGGAATTTCTGAAAATCCAAATGCATCTATTTGTTTCACACCAACTTCAACTTCTTCATCACAAATGATTACAGATAACAATTCTGTTATAAACTCGAATATTCTCCATTCTGTTTCAAACTCAATTTTCCAAACTCCAACACAAGTAAAACCAACTGTTTCCGTTTCCTCGGACGGAGTTCATAACTGGGAAGCAAGTAACTACAGCAACATTAACAACAACATGAACAAAACCGCTGGAAACAGCGTAAACTTCCTTGACAACAACGGCGCTGTACCGTTACAAGAAGAAATGAAATGGTCTGAATATCTTAACACACCATTTCTTATGCAGAATCAACCTTCTCAATCTATGTACACTGAGAATAAACCAGAAACAGGTTTCATAACAGATGAATCATGTACTAGTTGGCAGCAACAACAACAATCAAGTTTTCAACTATCTGATATATATAGCAAAGATCTGCAGAGATTTTCAGTGGCTTTTGGACAAACTCTGTAG 1143 0.3648 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQSGIDPNTHKPLSEIENHDNEKPNKSNHQKASVLSNEVMNLVIEPTKTSLEGYPLEVSTSSKINNSTSSSHELFLDTTRFGSTGYFSFQNLNFGSNIGISENPNASICFTPTSTSSSQMITDNNSVINSNILHSVSNSIFQTPTQVKPTVSVSSDGVHNWEASNYSNINNNMNKTAGNSVNFLDNNGAVPLQEEMKWSEYLNTPFLMQNQPSQSMYTENKPETGFITDESCTSWQQQQQSSFQLSDIYSKDLQRFSVAFGQTL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04025 380 FunFam MYB transcription factor 68 140 - -
Trre9g04025 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Trre9g04025 380 MobiDBLite consensus disorder prediction 128 143 - -
Trre9g04025 380 MobiDBLite consensus disorder prediction 119 148 - -
Trre9g04025 380 SMART sant 66 114 IPR001005 -
Trre9g04025 380 SMART sant 13 63 IPR001005 -
Trre9g04025 380 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre9g04025 380 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Trre9g04025 380 CDD SANT 17 61 IPR001005 -
Trre9g04025 380 Gene3D - 68 149 - -
Trre9g04025 380 Gene3D - 11 67 - -
Trre9g04025 380 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Trre9g04025 380 FunFam Myb transcription factor 11 67 - -
Trre9g04025 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Trre9g04025 380 CDD SANT 69 109 IPR001005 -
Trre9g04025 380 PANTHER MYB DOMAIN PROTEIN 55 1 321 - -
Trre9g04025 380 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre9g04025 380 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04025 Trre-Chr9 48271596 48272945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04025 1 380 MYB Transcription Factor Family AT1G09540 48.418 1.14e-116 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre9g04025 Myb_DNA-binding 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04025 K09422 - gmx:778072 452.595