Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04012 ATGGCTTCTTCCATTACCGCTTCACTCGGAACAACCAAACCTTCCTCTCTCCTTAAAACCCCACCATCATCTTCCTTTTCACTCTACAACACTTTCCGTCTCAACACCCTTCTCCGTTTACGACCTAACCACAAAAAAACTCCCACCGTTTCTTTCGTTATTTCTGCTATTGCCACCCCCAATACTACTCCCATCCTCACCCCTCAAGAAGCTTTTAAGCGTTTTCGTTTCGATGATGAAGCTCTTACCGTCAGCAAAGATGAACTCGACATTTCCAAGCTCCGTTTTCCTTCCAAACTCGTCGACTCGCTCCAGAAACGTGGAATTACCACTCTTTTCCCCATTCAGAGAGCTGTGTTGCTGCCTGCAATAGAAGGTAGAGATATCATTGCTCGCGCAAAGACTGGAACTGGGAAGACATTAGCATTTGGAATTCCAATTATTAAGGGTCTCATTGAGAATGAACAAAGCAATACGAGGCGGCTTGGTCGGTTTCCTAAAGTATTAGTCCTTGCACCTACTAGGGAGTTAGCAAAGCAAGTAGAGAAGGAGATAAAAGAATCTGCACCTTATCTAAACACAGTTTGTGTTTATGGTGGTGTTTCTTATGATATTCAAAAGAATGCGCTTTCACGCGGTGTTGATGTTGTGGTTGGAACACCTGGGAGACTAATTGACCTCATAAATGGGAGAAGCCTACAACTTAGTGAAATTCAGTATTTGGTACTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAATCAATTTTAGAAACAATCCCGTCTCAGAGGCAGATAATGCTTTTCTCTGCAACCATGCCGGGTTGGGTCAAGAAGTTGTCAAGAAAACATTTGAACAATCCAAAGACTATAGATTTGGTCGGTGACAGTGATGAAAAGCTTGCTGAAGGGATCAAACTTTATGCTGTACCAGCCACTTCAACATCAAAGCGGAGAATTCTTTATGGTCTTATAAGTGCCTATGGGAAGGGTGGGAAGACTATTGTTTTCACACGGACAAAAAGGGATGCTGATGAAATATCATTTTCATTGACAAATAGTATAGCTTCTAAAGCACTGCATGGTGATATCTCTCAGTATCAGAGAGAGAGAACATTAGATGGTTTTCGGCAAGGGAGATTCACAGTGCTTGTTGCTACGGATGTTGCTTCTCGTGGACTAGATATTCCCAATGTTGATTTGATTATACATTATGAACTTCCCGATGGTCCCGAGACTTTTGTACATCGCTCTGGTCGTACTGGACGTGCGGGAAAAGAGGGTGCTGCTGTTGTAATGTACACCACTAGCCAGAAAAGAACTGTTATATCCCTTGAGCGTGACGTAGGCTCCAAATTTGAATTTATTAATCCACCGCCTATGCAAGATTTACCGGAATCACCCACCAGGCAACCTGTTTCTACACTTGATAGAGATAGAAATAATCAGAGAGGTTATAGGGATCAGAGAGGTTCTAGAACCGGTGGAGATGACTGGTCAACTGGAGGTAGACGGTCAGGTGGGGATGCTGCCTGGTCAAGTGGAGGTAGGCGGTCAGGTGGGGACGACTGGTCAACTGGAGGTAGACGATCAAACGGTTATTCGTCAAACAGATCTTCATCATCAAATGGGTATTCGTCAAACAGATCTTCATCAAATGGGTATTTGTCAAACAGATCTTCATCATCAAACGGTTATTCGTCACCAAACAGATCTTCACCATCAAACAGAGGTAGTTATGGAGGGGCCTGTTTTAATTGTGGACAATCAGGGCATCGGGCATCAGAATGTCCCTCTAAACGAGACGACTTATTTTAG 1833 0.4364 MASSITASLGTTKPSSLLKTPPSSSFSLYNTFRLNTLLRLRPNHKKTPTVSFVISAIATPNTTPILTPQEAFKRFRFDDEALTVSKDELDISKLRFPSKLVDSLQKRGITTLFPIQRAVLLPAIEGRDIIARAKTGTGKTLAFGIPIIKGLIENEQSNTRRLGRFPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYDIQKNALSRGVDVVVGTPGRLIDLINGRSLQLSEIQYLVLDEADQMLAVGFEEDVESILETIPSQRQIMLFSATMPGWVKKLSRKHLNNPKTIDLVGDSDEKLAEGIKLYAVPATSTSKRRILYGLISAYGKGGKTIVFTRTKRDADEISFSLTNSIASKALHGDISQYQRERTLDGFRQGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGAAVVMYTTSQKRTVISLERDVGSKFEFINPPPMQDLPESPTRQPVSTLDRDRNNQRGYRDQRGSRTGGDDWSTGGRRSGGDAAWSSGGRRSGGDDWSTGGRRSNGYSSNRSSSSNGYSSNRSSSNGYLSNRSSSSNGYSSPNRSSPSNRGSYGGACFNCGQSGHRASECPSKRDDLF 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04012 610 CDD SF2_C_DEAD 310 439 - -
Trre9g04012 610 Gene3D - 578 608 - -
Trre9g04012 610 FunFam ATP-dependent RNA helicase RhlE 81 299 - -
Trre9g04012 610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 296 IPR014001 -
Trre9g04012 610 Pfam Zinc knuckle 588 604 IPR001878 GO:0003676|GO:0008270
Trre9g04012 610 MobiDBLite consensus disorder prediction 1 21 - -
Trre9g04012 610 MobiDBLite consensus disorder prediction 458 610 - -
Trre9g04012 610 Pfam Helicase conserved C-terminal domain 322 430 IPR001650 -
Trre9g04012 610 CDD DEADc 100 297 - -
Trre9g04012 610 Gene3D - 316 488 IPR027417 -
Trre9g04012 610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 470 IPR001650 -
Trre9g04012 610 SMART c2hcfinal6 588 604 IPR001878 GO:0003676|GO:0008270
Trre9g04012 610 Pfam DEAD/DEAH box helicase 113 285 IPR011545 GO:0003676|GO:0005524
Trre9g04012 610 ProSiteProfiles Zinc finger CCHC-type profile. 589 604 IPR001878 GO:0003676|GO:0008270
Trre9g04012 610 MobiDBLite consensus disorder prediction 530 588 - -
Trre9g04012 610 Gene3D - 90 300 IPR027417 -
Trre9g04012 610 SMART helicmild6 350 430 IPR001650 -
Trre9g04012 610 SMART ultradead3 108 313 IPR014001 -
Trre9g04012 610 MobiDBLite consensus disorder prediction 485 499 - -
Trre9g04012 610 SUPERFAMILY Retrovirus zinc finger-like domains 572 607 IPR036875 GO:0003676|GO:0008270
Trre9g04012 610 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 86 463 - -
Trre9g04012 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 451 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04012 Trre-Chr9 48140497 48144914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04012 115 452 Eukaryotic Initiation Factors Gene Family AT1G72730 36.963 1.48e-61 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04012 - - tpra:123902197 884.789