LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g03998	ATGGAAAGGACAATTTTCATTTGTTTAGTAGTGTTTGTGGGGTTGTTCACCTCAGAACTAAAGGTGGCCTCAGCAATTTGGCAGCAAGCTCATGCAACTTTCTATGGTGGAAGTGATGTCTCAGGAACTATGGGGGGTCCGTGTGGATATGGAAACCTATACACAGATGTTCCTCAATGGTGCCTCAGAGGAACTTCCATAACAATTACTGCCACTAATTTCTGTCCCCCAAACTTTGATCTCCCTAGTGACAAAGGTGGTTGGTGTAATCCTCCTAGACCACATTTTGACATGTCCCAACCAGCTTTTCAAATGATAACCAAATGTAAGGCTGGAATTGTTCCAATCCTTTACAGAAAAGTTGGGTGCAAAAAAAGTAGAGGCATAAGATTTACAATCAATGGAAGAGGCTATTTTGAACTAGTGCTTATAAGCAATGTAGGAGGAGCAGGGGATATTTCCAAAAGCATGTCCTTCAGAGTCCAACTCAGTAATGGAAAGACACGTACAGCTATTAATGTGCCACCCTCTAGTTGGAGATTTGGTCAGTCTTTCACCAGCAAGGTTCAATTCTGA	576	0.4219	MERTIFICLVVFVGLFTSELKVASAIWQQAHATFYGGSDVSGTMGGPCGYGNLYTDVPQWCLRGTSITITATNFCPPNFDLPSDKGGWCNPPRPHFDMSQPAFQMITKCKAGIVPILYRKVGCKKSRGIRFTINGRGYFELVLISNVGGAGDISKSMSFRVQLSNGKTRTAINVPPSSWRFGQSFTSKVQF	191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g03998	191	ProSiteProfiles	Expansin, family-45 endoglucanase-like domain profile.	41	128	IPR007112	-
	Trre9g03998	191	SUPERFAMILY	PHL pollen allergen	126	187	IPR036749	-
	Trre9g03998	191	PRINTS	Expansin signature	127	139	IPR002963	GO:0009664
	Trre9g03998	191	PRINTS	Expansin signature	86	103	IPR002963	GO:0009664
	Trre9g03998	191	PRINTS	Expansin signature	67	77	IPR002963	GO:0009664
	Trre9g03998	191	PRINTS	Expansin signature	139	160	IPR002963	GO:0009664
	Trre9g03998	191	PRINTS	Expansin signature	54	65	IPR002963	GO:0009664
	Trre9g03998	191	PRINTS	Expansin signature	103	116	IPR002963	GO:0009664
	Trre9g03998	191	Gene3D	-	58	124	IPR036908	-
	Trre9g03998	191	Gene3D	-	16	57	IPR036908	-
	Trre9g03998	191	Pfam	Lytic transglycolase	58	118	IPR009009	-
	Trre9g03998	191	SUPERFAMILY	Barwin-like endoglucanases	26	146	IPR036908	-
	Trre9g03998	191	PRINTS	Expansin/Lol pI family signature	44	62	IPR007118	GO:0005576
	Trre9g03998	191	PRINTS	Expansin/Lol pI family signature	26	41	IPR007118	GO:0005576
	Trre9g03998	191	ProSiteProfiles	Expansin, Cellulose-binding-like domain profile.	124	187	IPR007117	-
	Trre9g03998	191	SMART	dpbb_1	37	118	IPR007112	-
	Trre9g03998	191	CDD	DPBB_EXPA_N	27	123	-	-
	Trre9g03998	191	Gene3D	-	154	191	IPR036749	-
	Trre9g03998	191	PANTHER	EXPANSIN-A15	9	55	IPR002963	GO:0009664

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g03998	Trre-Chr9	48047581	48048754	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g03998	5	191	Expansin Gene Family	AT4G01630	54.365	1.87e-87	256

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g03998	-		-	gmx:100783801	305.064