Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03977 ATGCTTGCCGCTGCTTCCAGGCACGCCAGACCCACCACTGGCAGCGGCAATCGTATCCGGTCACTTCTAACTTCTTCCGGCATCACCACCGGCTACTCAATTTCCACCACAAACGGTTACCGTTACGGTTACAGTTACGGTTACAGAATCAGTTACAGTAACCGTCACAACAGAACATGTCCAAGCTTACTTTTCTCTATCAAAGGCTTTCTCTCTGATTCTTCATCATTATCATCATCATCATCATCTGGCAGAGTAACCAATCCATTCATACCATTACCTAATTTGAAGGTAGATGGAAAAGCATTGTTTTCAACTTCAGCTAAAACTGATGATGATGGAAGTCAGAAGAACCAAAAAACTTCTACTACTGTTGCTAAATCGTCTCTAGGTGGTGGACAAAATGCTGATATAAAGATCCTAAAATCGCTTGCTGGTTACCTTTGGATGAAAGATAATCTCGAATTTCAGTTTCGGGTTGTTGCTGCATTGTTTTTACTTGTTGGAGCTAAGGTTGTGAATGTTCAGGTCCCTTTCTTATTCAAGCTTGCAGTTGATTGGTTAAATACTGCCACGGGCAATGCTGCTGCTGTTGCTTCAAATCCTACTGCGATGGCTCTTTTTGCTACCCCGGTGGCAGTGTTGATTGGATACGGGATTGCACGTTCTGGAGCTTCAGCTTTCAATGAACTGCGGACTGCTTTGTTTTCCAAGGTAGCACTGCGAACAATTCGTTTAGTTTCAAGGAAGGTCTTTTCACATTTGCACGACCTTGACCTTCAATATCATCTAAGTCGAGAAACTGGTGGATTAAGTCGAATAATTGATCGTGGTAGCCGTGCAATAAATTTCATTCTCTCCGCTATGGTGTTCAATGTAGTACCCACTGTATTAGAGATATCTATGGTATCAGGTATACTGGCCTACAAATTTGGAGCACCTTTTGCATGGATTACTTCCCTGTCAGTTGCTGCTTATGTTGTTTTCACACTTTCTATCACACAGTGGAGGACTAAATTCAGGAAAGCCATGAATAAGGCTGATAATGACGCTAGTACTAGGCAAATTGATTCACTTATTAATTATGAGACCGTCAAATATTTCAATAATGAAGGTTATGAAACCGATCATTATGACAAGTACCTAAAGAGGTATGAGGATGCTGCTCTGAAAACCCAACACAGTCTTGCTTTGTTGAACTTTGGTCAAAATGCTATATTTAGTGCTGCTCTTTCTACAGCAATGGTTCTATGTTCTCATGGAATAATGGGTGGCACAATGACCGTTGGTGATTTGGTGATGGTAAATGGGCTCCTCTTCCAACTATCTCTTCCACTCAATTTCCTTGGCAGTGTTTATCGTGAAACTATACAAAGTCTAATTGACATGAAATCCATGTTCCAATTACTTGAGGAAAAAGCAGACATTAGGGATAAAGAAAATGCAAAGCCTCTAAGATTTAATGGGGGGAGTATCCAATTTGAGAATGTACATTTTAGTTACCTCACAGAAAGAAAAATACTAGACGGAATATCACTACTTGTACCAGCTGGTAAAAGTGTTGCAATTGTTGGGACTAGTGGAAGTGGAAAATCAACCATTCTCAGAATGCTATTCAGATTTTTTGATCCCCATTCTGGAAGTATAAAGATAGATGATCAAGATATTCGGGACGTAACCCTTGAGAGTTTACGGAAGTCTATTGGTGTTGTTCCACAAGATACTGTACTTTTCAATGATACGATATTTCATAACATTCACTATGGTCGGCTTTCATCAACAGAAGAGGAGGTCTATGAAGCTGCCCGGAAAGCAGCAATCCATGACACTATCATGAGTTTTCCAGAGAAATACTCCACTGTTGTGGGAGAGCGAGGGCTAAAGTTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTTGCTCGGGCATTCTTAAAAGCACCTGCAATACTGTTGTGTGATGAAGCTACAAGTGCTCTAGACAGCACAACAGAAGCAGAGATTTTAAGTGCATTGAAGTCACTATCAACTAATCGAACTTCCATATTCATTGCTCACAGGCTCACCACTGCAATGCAGTGTGATGAGATCATTGTTTTGGAAAATGGAAAGGTGGTTGAGCATGGACCACATGAAGTGCTGTTAGCAAATGCAGGAAGATATGCCCAGCTTTGGGGACAGCAAAATAACACTATTGATGCAATTGACACAGCCATCAAATTGGGAGCATAA 2229 0.4114 MLAAASRHARPTTGSGNRIRSLLTSSGITTGYSISTTNGYRYGYSYGYRISYSNRHNRTCPSLLFSIKGFLSDSSSLSSSSSSGRVTNPFIPLPNLKVDGKALFSTSAKTDDDGSQKNQKTSTTVAKSSLGGGQNADIKILKSLAGYLWMKDNLEFQFRVVAALFLLVGAKVVNVQVPFLFKLAVDWLNTATGNAAAVASNPTAMALFATPVAVLIGYGIARSGASAFNELRTALFSKVALRTIRLVSRKVFSHLHDLDLQYHLSRETGGLSRIIDRGSRAINFILSAMVFNVVPTVLEISMVSGILAYKFGAPFAWITSLSVAAYVVFTLSITQWRTKFRKAMNKADNDASTRQIDSLINYETVKYFNNEGYETDHYDKYLKRYEDAALKTQHSLALLNFGQNAIFSAALSTAMVLCSHGIMGGTMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLIDMKSMFQLLEEKADIRDKENAKPLRFNGGSIQFENVHFSYLTERKILDGISLLVPAGKSVAIVGTSGSGKSTILRMLFRFFDPHSGSIKIDDQDIRDVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSSTEEEVYEAARKAAIHDTIMSFPEKYSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSLSTNRTSIFIAHRLTTAMQCDEIIVLENGKVVEHGPHEVLLANAGRYAQLWGQQNNTIDAIDTAIKLGA 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03977 742 Gene3D - 483 737 IPR027417 -
Trre9g03977 742 Pfam ABC transporter 508 657 IPR003439 GO:0005524
Trre9g03977 742 SUPERFAMILY ABC transporter transmembrane region 156 475 IPR036640 GO:0005524|GO:0016020
Trre9g03977 742 MobiDBLite consensus disorder prediction 1 20 - -
Trre9g03977 742 CDD ABCC_ATM1_transporter 492 727 - -
Trre9g03977 742 CDD ABC_6TM_ATM1_ABCB7 163 466 - -
Trre9g03977 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 727 IPR027417 -
Trre9g03977 742 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 492 726 IPR003439 GO:0005524
Trre9g03977 742 FunFam ABC transporter B family member 25 484 738 - -
Trre9g03977 742 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 161 458 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre9g03977 742 Gene3D ABC transporter type 1, transmembrane domain 147 482 IPR036640 GO:0005524|GO:0016020
Trre9g03977 742 SMART AAA_5 517 703 IPR003593 GO:0016887
Trre9g03977 742 ProSitePatterns ABC transporters family signature. 629 643 IPR017871 GO:0005524|GO:0016887
Trre9g03977 742 MobiDBLite consensus disorder prediction 108 130 - -
Trre9g03977 742 Pfam ABC transporter transmembrane region 161 445 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre9g03977 742 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 56 723 IPR039421 -
Trre9g03977 742 MobiDBLite consensus disorder prediction 107 130 - -
Trre9g03977 742 FunFam ATP-binding cassette sub-family B member 7 133 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03977 Trre-Chr9 47891928 47903224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03977 328 728 Calmodulin-binding Proteins AT2G36910 35.437 2.10e-63 228