Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03976 ATGAACAACATCAATAGACAGTGGATATGGAATGGAGATAGCTTAGAATATCCAGAGTTTGTTCTTGTTCCTGGTTGGTCCGAAGTAAAAGACAGTGCTTTGAATGATGAAAACAAAGATCCTTCACTTGAGAATAAGATTAGAAAAGTGTTTCATTGGAAAGAGGAAGAACACAGGTTATTTCTAGAGGGGCTAGAGATGTATGGCAGGGGAAATTGGAAAGCAATTTCAAAACATGTTGGTACAAAAACTTCAACTCAAGTTGCTAGCCATGCTCAAAAGCATTTCATTCGAGTAAGAGTTGATCAACAAAGTGGCTATTCAACAAAAAAGAGTAAAAGAAGAAGCAAGTTTGACACCACCTCATGGAATGGAGATTTCCACCCTCTTCTCTATAGGGACTATATTCCACCTTCTCCACAAATGTTGAAACACAACCAACTATAG 447 0.3781 MNNINRQWIWNGDSLEYPEFVLVPGWSEVKDSALNDENKDPSLENKIRKVFHWKEEEHRLFLEGLEMYGRGNWKAISKHVGTKTSTQVASHAQKHFIRVRVDQQSGYSTKKSKRRSKFDTTSWNGDFHPLLYRDYIPPSPQMLKHNQL 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03976 148 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 100 IPR017930 -
Trre9g03976 148 NCBIfam myb-like DNA-binding domain, SHAQKYF class 51 98 IPR006447 GO:0003677
Trre9g03976 148 CDD SANT 53 96 IPR001005 -
Trre9g03976 148 ProSiteProfiles Myb-like domain profile. 53 96 IPR001005 -
Trre9g03976 148 PANTHER TRANSCRIPTION FACTOR KUA1 42 124 - -
Trre9g03976 148 Pfam Myb-like DNA-binding domain 53 95 IPR001005 -
Trre9g03976 148 SMART sant 49 98 IPR001005 -
Trre9g03976 148 SUPERFAMILY Homeodomain-like 48 100 IPR009057 -
Trre9g03976 148 ProSiteProfiles SANT domain profile. 53 100 IPR017884 -
Trre9g03976 148 Gene3D - 51 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03976 Trre-Chr9 47859882 47861106 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03976 53 98 EF-hand Containing Proteins AT3G07740 39.130 2.04e-07 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre9g03976 Myb_DNA-binding 7.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03976 - - tpra:123922541 167.162